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10.1016/j.genrep.2021.101045

http://scihub22266oqcxt.onion/10.1016/j.genrep.2021.101045
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33615041!7884226!33615041
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suck abstract from ncbi


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pmid33615041      Gene+Rep 2021 ; 23 (ä): 101045
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  • SARS-CoV-2 spillover transmission due to recombination event #MMPMID33615041
  • Shahhosseini N; Wong G; Kobinger GP; Chinikar S
  • Gene Rep 2021[Jun]; 23 (ä): 101045 PMID33615041show ga
  • In late 2019, a novel Coronavirus emerged in China. Perceiving the modulating factors of cross-species virus transmission is critical to elucidate the nature of virus emergence. Using bioinformatics tools, we analyzed the mapping of the SARS-CoV-2 genome, modeling of protein structure, and analyze the evolutionary origin of SARS-CoV-2, as well as potential recombination events. Phylogenetic tree analysis shows that SARS-CoV-2 has the closest evolutionary relationship with Bat-SL-CoV-2 (RaTG13) at the scale of the complete virus genome, and less similarity to Pangolin-CoV. However, the Receptor Binding Domain (RBD) of SARS-CoV-2 is almost identical to Pangolin-CoV at the aa level, suggesting that spillover transmission probably occurred directly from pangolins, but not bats. Further recombination analysis revealed the pathway for spillover transmission from Bat-SL-CoV-2 and Pangolin-CoV. Here, we provide evidence for recombination event between Bat-SL-CoV-2 and Pangolin-CoV that resulted in the emergence of SARS-CoV-2. Nevertheless, the role of mutations should be noted as another influencing factor in the continuing evolution and resurgence of novel SARS-CoV-2 variants.
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