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10.1016/j.bpj.2021.02.007

http://scihub22266oqcxt.onion/10.1016/j.bpj.2021.02.007
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33607086!7886630!33607086
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suck abstract from ncbi


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pmid33607086      Biophys+J 2021 ; 120 (6): 1011-1019
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  • Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction #MMPMID33607086
  • Cao W; Dong C; Kim S; Hou D; Tai W; Du L; Im W; Zhang XF
  • Biophys J 2021[Mar]; 120 (6): 1011-1019 PMID33607086show ga
  • The current COVID-19 pandemic has led to a devastating impact across the world. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (the virus causing COVID-19) is known to use the receptor-binding domain (RBD) at viral surface spike (S) protein to interact with the angiotensin-converting enzyme 2 (ACE2) receptor expressed on many human cell types. The RBD-ACE2 interaction is a crucial step to mediate the host cell entry of SARS-CoV-2. Recent studies indicate that the ACE2 interaction with the SARS-CoV-2 S protein has a higher affinity than its binding with the structurally identical S protein of SARS-CoV-1, the virus causing the 2002-2004 SARS outbreak. However, the biophysical mechanism behind such binding affinity difference is unclear. This study utilizes combined single-molecule force spectroscopy and steered molecular dynamics (SMD) simulation approaches to quantify the specific interactions between SARS-CoV-2 or SARS-CoV-1 RBD and ACE2. Depending on the loading rates, the unbinding forces between SARS-CoV-2 RBD and ACE2 range from 70 to 105 pN and are 30-40% higher than those of SARS-CoV-1 RBD and ACE2 under similar loading rates. SMD results indicate that SARS-CoV-2 RBD interacts with the N-linked glycan on Asn90 of ACE2. This interaction is mostly absent in the SARS-CoV-1 RBD-ACE2 complex. During the SMD simulations, the extra RBD-N-glycan interaction contributes to a greater force and prolonged interaction lifetime. The observation is confirmed by our experimental force spectroscopy study. After removing N-linked glycans on ACE2, its mechanical binding strength with SARS-CoV-2 RBD decreases to a similar level of the SARS-CoV-1 RBD-ACE2 interaction. Together, the study uncovers the mechanism behind the difference in ACE2 binding between SARS-CoV-2 and SARS-CoV-1 and could help develop new strategies to block SARS-CoV-2 entry.
  • |Angiotensin-Converting Enzyme 2/*metabolism[MESH]
  • |Biomechanical Phenomena[MESH]
  • |Computer Simulation[MESH]
  • |HEK293 Cells[MESH]
  • |Humans[MESH]
  • |Models, Biological[MESH]
  • |Polysaccharides/chemistry/metabolism[MESH]
  • |Protein Binding[MESH]
  • |Protein Domains[MESH]
  • |Single Molecule Imaging[MESH]


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