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10.1016/j.ab.2021.114124

http://scihub22266oqcxt.onion/10.1016/j.ab.2021.114124
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33607059!ä!33607059

suck abstract from ncbi


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pmid33607059      Anal+Biochem 2021 ; 626 (ä): 114124
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  • Array-based dynamic allele specific hybridization (Array-DASH): Optimization-free microarray processing for multiple simultaneous genomic assays #MMPMID33607059
  • Gibson SJ; Zahra N; Freeman PJ; Howard C; Lancaster O; Veal C; Fontdevila MC; Paredes R; Noguera-Julian M; Slater A; Brookes AJ
  • Anal Biochem 2021[Aug]; 626 (ä): 114124 PMID33607059show ga
  • We report proof-of-principle experiments regarding a dynamic microarray protocol enabling accurate and semi-quantitative DNA analysis for re-sequencing, fingerprinting and genotyping. Single-stranded target molecules hybridise to surface-bound probes during initial gradual cooling with high-fidelity. Real-time tracking of target denaturation (via fluorescence) during a 'dynamic' gradual heating phase permits 'melt-curve' analysis. The probe most closely matching the target sequence is identified based on the highest melting temperature. We demonstrated a >99% re-sequencing accuracy and a potential detection rate of 1% for SNPs. Experiments employing Hypericum ribosomal ITS regions and HIV genomes illustrated a reliable detection level of 5% plus simultaneous re-sequencing and genotyping. Such performance suggests a range of potential real-world applications involving rapid sequence interrogation, for example, in the Covid-19 pandemic. Guidance is offered towards the development of a commercial platform and dedicated software required to bring this technique into mainstream science.
  • |*Genome, Plant[MESH]
  • |*Genome, Viral[MESH]
  • |*Genotyping Techniques[MESH]
  • |*Oligonucleotide Array Sequence Analysis[MESH]
  • |*Software[MESH]
  • |COVID-19/epidemiology/*genetics[MESH]
  • |HIV-1/*genetics[MESH]
  • |Humans[MESH]


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