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10.1186/s13073-021-00839-5

http://scihub22266oqcxt.onion/10.1186/s13073-021-00839-5
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33563320!7871948!33563320
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suck abstract from ncbi


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pmid33563320      Genome+Med 2021 ; 13 (1): 21
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  • CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes #MMPMID33563320
  • Baker DJ; Aydin A; Le-Viet T; Kay GL; Rudder S; de Oliveira Martins L; Tedim AP; Kolyva A; Diaz M; Alikhan NF; Meadows L; Bell A; Gutierrez AV; Trotter AJ; Thomson NM; Gilroy R; Griffith L; Adriaenssens EM; Stanley R; Charles IG; Elumogo N; Wain J; Prakash R; Meader E; Mather AE; Webber MA; Dervisevic S; Page AJ; O'Grady J
  • Genome Med 2021[Feb]; 13 (1): 21 PMID33563320show ga
  • We present CoronaHiT, a platform and throughput flexible method for sequencing SARS-CoV-2 genomes ( 96 on Illumina NextSeq) depending on changing requirements experienced during the pandemic. CoronaHiT uses transposase-based library preparation of ARTIC PCR products. Method performance was demonstrated by sequencing 2 plates containing 95 and 59 SARS-CoV-2 genomes on nanopore and Illumina platforms and comparing to the ARTIC LoCost nanopore method. Of the 154 samples sequenced using all 3 methods, >/= 90% genome coverage was obtained for 64.3% using ARTIC LoCost, 71.4% using CoronaHiT-ONT and 76.6% using CoronaHiT-Illumina, with almost identical clustering on a maximum likelihood tree. This protocol will aid the rapid expansion of SARS-CoV-2 genome sequencing globally.
  • |*Pandemics[MESH]
  • |COVID-19/*genetics/virology[MESH]
  • |Genome, Viral/*genetics[MESH]
  • |High-Throughput Nucleotide Sequencing[MESH]
  • |Humans[MESH]
  • |RNA, Viral/genetics[MESH]
  • |SARS-CoV-2/*genetics/pathogenicity[MESH]


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