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10.1038/s41598-021-82938-2

http://scihub22266oqcxt.onion/10.1038/s41598-021-82938-2
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suck abstract from ncbi


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pmid33542420      Sci+Rep 2021 ; 11 (1): 3187
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  • Dynamics of binding ability prediction between spike protein and human ACE2 reveals the adaptive strategy of SARS-CoV-2 in humans #MMPMID33542420
  • Xue X; Shi J; Xu H; Qin Y; Yang Z; Feng S; Liu D; Jian L; Hua L; Wang Y; Zhang Q; Huang X; Zhang X; Li X; Chen C; Guo J; Tang W; Liu J
  • Sci Rep 2021[Feb]; 11 (1): 3187 PMID33542420show ga
  • SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel coronavirus causing the COVID-19 pandemic in 2020. High adaptive plasticity on the spike protein of SASR-CoV-2 enables it to transmit across different host species. In the present study, we collected 2092 high-quality genome sequences of SARS-CoV-2 from 160 regions in over 50 countries and reconstructed their phylogeny. We also analyzed the polymorphic interaction between spike protein and human ACE2 (hACE2). Phylogenetic analysis of SARS-CoV-2 suggests that SARS-CoV-2 is probably originated from a recombination event on the spike protein between a bat coronavirus and a pangolin coronavirus that endows it humans infectivity. Compared with other regions in the S gene of SARS-CoV-2, the direct-binding sites of the receptor-binding domain (RBD) is more conserved. We focused on 3,860 amino acid mutations in spike protein RBD (T333-C525) of SARS-CoV-2 and simulated their differential stability and binding affinity to hACE2 (S19-D615). The results indicate no preference for SARS-CoV-2 infectivity on people of different ethnic groups. The variants in the spike protein of SARS-CoV-2 may also be a good indicator demonstrating the transmission route of SARS-CoV-2 from its natural reservoir to human hosts.
  • |Angiotensin-Converting Enzyme 2/*genetics[MESH]
  • |Animals[MESH]
  • |Binding Sites[MESH]
  • |COVID-19/*virology[MESH]
  • |Humans[MESH]
  • |Mutation[MESH]
  • |Polymorphism, Genetic[MESH]
  • |Protein Binding[MESH]
  • |SARS-CoV-2/genetics[MESH]


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