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10.1186/s13099-021-00398-5

http://scihub22266oqcxt.onion/10.1186/s13099-021-00398-5
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33516247!7846909!33516247
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suck abstract from ncbi


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pmid33516247      Gut+Pathog 2021 ; 13 (1): 7
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  • Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing #MMPMID33516247
  • Papoutsis A; Borody T; Dolai S; Daniels J; Steinberg S; Barrows B; Hazan S
  • Gut Pathog 2021[Jan]; 13 (1): 7 PMID33516247show ga
  • BACKGROUND: SARS-CoV-2 has been detected not only in respiratory secretions, but also in stool collections. Here were sought to identify SARS-CoV-2 by enrichment next-generation sequencing (NGS) from fecal samples, and to utilize whole genome analysis to characterize SARS-CoV-2 mutational variations in COVID-19 patients. RESULTS: Study participants underwent testing for SARS-CoV-2 from fecal samples by whole genome enrichment NGS (n = 14), and RT-PCR nasopharyngeal swab analysis (n = 12). The concordance of SARS-CoV-2 detection by enrichment NGS from stools with RT-PCR nasopharyngeal analysis was 100%. Unique variants were identified in four patients, with a total of 33 different mutations among those in which SARS-CoV-2 was detected by whole genome enrichment NGS. CONCLUSION: These results highlight the potential viability of SARS-CoV-2 in feces, its ongoing mutational accumulation, and its possible role in fecal-oral transmission. This study also elucidates the advantages of SARS-CoV-2 enrichment NGS, which may be a key methodology to document complete viral eradication. Trial registration ClinicalTrials.gov, NCT04359836, Registered 24 April 2020, https://clinicaltrials.gov/ct2/show/NCT04359836?term=NCT04359836&draw=2&rank=1 ).
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