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10.2144/btn-2020-0153

http://scihub22266oqcxt.onion/10.2144/btn-2020-0153
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33512248!7931620!33512248
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suck abstract from ncbi


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pmid33512248      Biotechniques 2021 ; 70 (3): 149-159
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  • A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities #MMPMID33512248
  • Shaffer JP; Marotz C; Belda-Ferre P; Martino C; Wandro S; Estaki M; Salido RA; Carpenter CS; Zaramela LS; Minich JJ; Bryant M; Sanders K; Fraraccio S; Ackermann G; Humphrey G; Swafford AD; Miller-Montgomery S; Knight R
  • Biotechniques 2021[Mar]; 70 (3): 149-159 PMID33512248show ga
  • One goal of microbial ecology researchers is to capture the maximum amount of information from all organisms in a sample. The recent COVID-19 pandemic, caused by the RNA virus SARS-CoV-2, has highlighted a gap in traditional DNA-based protocols, including the high-throughput methods the authors previously established as field standards. To enable simultaneous SARS-CoV-2 and microbial community profiling, the authors compared the relative performance of two total nucleic acid extraction protocols with the authors' previously benchmarked protocol. The authors included a diverse panel of environmental and host-associated sample types, including body sites commonly swabbed for COVID-19 testing. Here the authors present results comparing the cost, processing time, DNA and RNA yield, microbial community composition, limit of detection and well-to-well contamination between these protocols.
  • |Animals[MESH]
  • |Biodiversity[MESH]
  • |Cats[MESH]
  • |Chemical Fractionation/methods[MESH]
  • |DNA, Viral/*isolation & purification[MESH]
  • |Feces/microbiology/virology[MESH]
  • |Female[MESH]
  • |Fermented Foods/microbiology[MESH]
  • |High-Throughput Nucleotide Sequencing/*methods[MESH]
  • |Humans[MESH]
  • |Limit of Detection[MESH]
  • |Male[MESH]
  • |Metagenomics/methods[MESH]
  • |Mice[MESH]
  • |Microbiota/*genetics[MESH]
  • |RNA, Ribosomal, 16S/*isolation & purification[MESH]
  • |SARS-CoV-2/*genetics[MESH]
  • |Saliva/microbiology/virology[MESH]


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