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10.1016/j.molcel.2020.12.041

http://scihub22266oqcxt.onion/10.1016/j.molcel.2020.12.041
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suck abstract from ncbi


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pmid33444546      Mol+Cell 2021 ; 81 (3): 584-598.e5
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  • Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms #MMPMID33444546
  • Huston NC; Wan H; Strine MS; de Cesaris Araujo Tavares R; Wilen CB; Pyle AM
  • Mol Cell 2021[Feb]; 81 (3): 584-598.e5 PMID33444546show ga
  • Severe-acute-respiratory-syndrome-related coronavirus 2 (SARS-CoV-2) is the positive-sense RNA virus that causes coronavirus disease 2019 (COVID-19). The genome of SARS-CoV-2 is unique among viral RNAs in its vast potential to form RNA structures, yet as much as 97% of its 30 kilobases have not been structurally explored. Here, we apply a novel long amplicon strategy to determine the secondary structure of the SARS-CoV-2 RNA genome at single-nucleotide resolution in infected cells. Our in-depth structural analysis reveals networks of well-folded RNA structures throughout Orf1ab and reveals aspects of SARS-CoV-2 genome architecture that distinguish it from other RNA viruses. Evolutionary analysis shows that several features of the SARS-CoV-2 genomic structure are conserved across beta-coronaviruses, and we pinpoint regions of well-folded RNA structure that merit downstream functional analysis. The native, secondary structure of SARS-CoV-2 presented here is a roadmap that will facilitate focused studies on the viral life cycle, facilitate primer design, and guide the identification of RNA drug targets against COVID-19.
  • |*COVID-19/genetics/metabolism[MESH]
  • |*Genome, Viral[MESH]
  • |*Nucleic Acid Conformation[MESH]
  • |*RNA, Viral/genetics/metabolism[MESH]
  • |*Response Elements[MESH]
  • |*SARS-CoV-2/genetics/metabolism[MESH]
  • |Cell Line, Tumor[MESH]


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