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10.1016/j.jviromet.2021.114062

http://scihub22266oqcxt.onion/10.1016/j.jviromet.2021.114062
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33428990!7833634!33428990
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suck abstract from ncbi


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pmid33428990      J+Virol+Methods 2021 ; 289 (ä): 114062
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  • An in-well direct lysis method for rapid detection of SARS-CoV-2 by real time RT-PCR in eSwab specimens #MMPMID33428990
  • Jorgensen RL; Pedersen MS; Chauhan AS; Andreasson LM; Kristiansen GQ; Lisby JG; Rosenstierne MW; Schonning K
  • J Virol Methods 2021[Mar]; 289 (ä): 114062 PMID33428990show ga
  • BACKGROUND: Diagnostic real time reverse transcription PCR (rRT-PCR) is usually done using nucleic acid (NA) purified from the sample. In the SARS-CoV-2 pandemic reagents and utensils for NA purification has been in short supply. This has generated interest in methods that eliminate the need for NA purification. OBJECTIVES: To investigate if addition of detergent to rRT-PCR master mix (MM) enabled in-well direct lysis and detection of SARS-CoV-2 in clinical eSwab specimens. STUDY DESIGN: IGEPAL-CA-630 (IGEPAL) was added to SARS-CoV-2 MM to 0.3 % final concentration and crude sample was added directly to the PCR well containing MM. Cycle of positivity (Cp) and categorical agreement was compared in samples tested in standard rRT-PCR after NA purification and in in-well lysis, direct rRT-PCR. RESULTS: In-well lysis direct rRT-PCR detected SARS-CoV-2 in 27/30 previously SARS-CoV-2+ samples with an average bias of 3.26 cycles (95 %CI: 0.08-6.43 cycles). All 30 previously test negative samples remained negative when tested in in-well lysis, direct PCR. CONCLUSIONS: Supplementation of detergent to MM was shown to be useful for the detection of SARS CoV-2 in eSwab specimens (COPAN) by direct rRT-PCR without prior NA purification.
  • |COVID-19 Nucleic Acid Testing/*methods[MESH]
  • |COVID-19/*diagnosis[MESH]
  • |Detergents/chemistry[MESH]
  • |Humans[MESH]
  • |RNA, Viral/*isolation & purification[MESH]
  • |SARS-CoV-2/*isolation & purification[MESH]


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