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10.1093/bib/bbaa383

http://scihub22266oqcxt.onion/10.1093/bib/bbaa383
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33377145!7953982!33377145
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suck abstract from ncbi


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pmid33377145      Brief+Bioinform 2021 ; 22 (2): 1006-1022
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  • Evolutionary and codon usage preference insights into spike glycoprotein of SARS-CoV-2 #MMPMID33377145
  • Malik YS; Ansari MI; Kattoor JJ; Kaushik R; Sircar S; Subbaiyan A; Tiwari R; Dhama K; Ghosh S; Tomar S; Zhang KYJ
  • Brief Bioinform 2021[Mar]; 22 (2): 1006-1022 PMID33377145show ga
  • Interaction of SARS-CoV-2 spike glycoprotein with the ACE2 cell receptor is very crucial for virus attachment to human cells. Selected mutations in SARS-CoV-2 S-protein are reported to strengthen its binding affinity to mammalian ACE2. The N501T mutation in SARS-CoV-2-CTD furnishes better support to hotspot 353 in comparison with SARS-CoV and shows higher affinity for receptor binding. Recombination analysis exhibited higher recombination events in SARS-CoV-2 strains, irrespective of their geographical origin or hosts. Investigation further supports a common origin among SARS-CoV-2 and its predecessors, SARS-CoV and bat-SARS-like-CoV. The recombination events suggest a constant exchange of genetic material among the co-infecting viruses in possible reservoirs and human hosts before SARS-CoV-2 emerged. Furthermore, a comprehensive analysis of codon usage bias (CUB) in SARS-CoV-2 revealed significant CUB among the S-genes of different beta-coronaviruses governed majorly by natural selection and mutation pressure. Various indices of codon usage of S-genes helped in quantifying its adaptability in other animal hosts. These findings might help in identifying potential experimental animal models for investigating pathogenicity for drugs and vaccine development experiments.
  • |*Biological Evolution[MESH]
  • |*Codon Usage[MESH]
  • |Angiotensin-Converting Enzyme 2/metabolism[MESH]
  • |Animals[MESH]
  • |Humans[MESH]
  • |Models, Animal[MESH]
  • |Mutation[MESH]
  • |RNA, Transfer/genetics[MESH]
  • |SARS-CoV-2/*genetics[MESH]


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