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10.1590/0037-8682-0657-2020

http://scihub22266oqcxt.onion/10.1590/0037-8682-0657-2020
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33263691!7723368!33263691
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suck abstract from ncbi


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pmid33263691      Rev+Soc+Bras+Med+Trop 2020 ; 53 (ä): e20200657
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  • In silico analysis of mismatches in RT-qPCR assays of 177 SARS-CoV-2 sequences from Brazil #MMPMID33263691
  • Santos RDS; Bret RSC; Moreira ACOM; Campos AR; Silva ARAE; Lima DM; Tavares KCS
  • Rev Soc Bras Med Trop 2020[]; 53 (ä): e20200657 PMID33263691show ga
  • INTRODUCTION: Quantitative reverse transcription polymerase chain reaction (RT-qPCR) can detect the severe acute respiratory syndrome Coronavirus-2 (SARS-CoV-2) in a highly specific manner. However, a decrease in the specificity of PCR assays for their targets may lead to false negative results. METHODS: Here, 177 high-coverage complete SARS-CoV-2 genome sequences from 13 Brazilian states were aligned with 15 WHO recommended PCR assays. RESULTS: Only 3 of the 15 completely aligned to all Brazilian sequences. Ten assays had mismatches in up to 3 sequences and two in many sequences. CONCLUSION: These results should be taken into consideration when using PCR-based diagnostics in Brazil.
  • |*Genome, Viral[MESH]
  • |Brazil[MESH]
  • |COVID-19/*virology[MESH]
  • |Computer Simulation[MESH]
  • |Humans[MESH]
  • |Pandemics[MESH]
  • |RNA, Viral/genetics[MESH]
  • |Reverse Transcriptase Polymerase Chain Reaction[MESH]
  • |SARS-CoV-2/*genetics[MESH]


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