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10.1038/s41598-020-77794-5

http://scihub22266oqcxt.onion/10.1038/s41598-020-77794-5
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suck abstract from ncbi


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pmid33257760      Sci+Rep 2020 ; 10 (1): 20808
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  • Conserved interactions required for inhibition of the main protease of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) #MMPMID33257760
  • Shitrit A; Zaidman D; Kalid O; Bloch I; Doron D; Yarnizky T; Buch I; Segev I; Ben-Zeev E; Segev E; Kobiler O
  • Sci Rep 2020[Nov]; 10 (1): 20808 PMID33257760show ga
  • The COVID-19 pandemic caused by the SARS-CoV-2 requires a fast development of antiviral drugs. SARS-CoV-2 viral main protease (Mpro, also called 3C-like protease, 3CLpro) is a potential target for drug design. Crystal and co-crystal structures of the SARS-CoV-2 Mpro have been solved, enabling the rational design of inhibitory compounds. In this study we analyzed the available SARS-CoV-2 and the highly similar SARS-CoV-1 crystal structures. We identified within the active site of the Mpro, in addition to the inhibitory ligands' interaction with the catalytic C145, two key H-bond interactions with the conserved H163 and E166 residues. Both H-bond interactions are present in almost all co-crystals and are likely to occur also during the viral polypeptide cleavage process as suggested from docking of the Mpro cleavage recognition sequence. We screened in silico a library of 6900 FDA-approved drugs (ChEMBL) and filtered using these key interactions and selected 29 non-covalent compounds predicted to bind to the protease. Additional screen, using DOCKovalent was carried out on DrugBank library (11,414 experimental and approved drugs) and resulted in 6 covalent compounds. The selected compounds from both screens were tested in vitro by a protease activity inhibition assay. Two compounds showed activity at the 50 microM concentration range. Our analysis and findings can facilitate and focus the development of highly potent inhibitors against SARS-CoV-2 infection.
  • |*COVID-19 Drug Treatment[MESH]
  • |*Drug Evaluation, Preclinical[MESH]
  • |Amino Acid Sequence[MESH]
  • |Antiviral Agents/*pharmacology[MESH]
  • |Catalytic Domain/drug effects[MESH]
  • |Coronavirus 3C Proteases/*antagonists & inhibitors/metabolism[MESH]
  • |Drug Design[MESH]
  • |Drug Discovery[MESH]
  • |Humans[MESH]
  • |Models, Molecular[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Protease Inhibitors/*pharmacology[MESH]
  • |SARS-CoV-2/drug effects/enzymology[MESH]
  • |Severe acute respiratory syndrome-related coronavirus/drug effects/enzymology[MESH]


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