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suck abstract from ncbi


10.1080/21645515.2020.1823777

http://scihub22266oqcxt.onion/10.1080/21645515.2020.1823777
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suck abstract from ncbi

pmid33175614      Hum+Vaccin+Immunother 2021 ; 17 (4): 1097-1108
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  • COVID-19 coronavirus vaccine T cell epitope prediction analysis based on distributions of HLA class I loci (HLA-A, -B, -C) across global populations #MMPMID33175614
  • Cun Y; Li C; Shi L; Sun M; Dai S; Sun L; Shi L; Yao Y
  • Hum Vaccin Immunother 2021[Apr]; 17 (4): 1097-1108 PMID33175614show ga
  • T cell immunity, such as CD4 and/or CD8 T cell responses, plays a vital role in controlling the virus infection and pathological damage. Several studies have reported SARS-CoV-2 proteins could serve as ideal vaccine candidates against SARS-CoV-2 infection by activating the T cell responses. In the current study, based on the SARS-CoV-2 sequence and distribution of host human leukocyte antigen (HLA), we predicted the possible epitopes for the vaccine against SARS-CoV-2 infections. Firstly, the current study retrieved the SARS-CoV-2 S and N protein sequences from the NCBI Database. Then, using the Immune Epitope Database Analysis Resource, we predicted the CTL epitopes of the SARS-CoV-2 S and N proteins according to worldwide frequency distributions of HLA-A, -B, and -C alleles (>1%). Our results predicted 90 and 106 epitopes of N and S proteins, respectively. Epitope cluster analysis showed 16 and 34 respective clusters of SARS-CoV-2 N and S proteins, which covered 95.91% and 96.14% of the global population, respectively. After epitope conservancy analysis, 8 N protein epitopes and 6 S protein epitopes showed conservancy within two SARS-CoV-2 types. Of these 14 epitopes, 13 could cover SARS coronavirus and Bat SARS-like coronavirus. The remaining epitope (KWPWYIWLGF(1211-1220)) could cover MERS coronavirus. Finally, the 14-epitope combination could vaccinate 89.60% of all individuals worldwide. Our results propose single or combined CTL epitopes predicted in the current study as candidates for vaccines to effectively control SARS-CoV-2 infection and development.
  • |CD4-Positive T-Lymphocytes/immunology[MESH]
  • |CD8-Positive T-Lymphocytes/immunology[MESH]
  • |COVID-19 Vaccines/*immunology[MESH]
  • |COVID-19/immunology/prevention & control[MESH]
  • |Coronavirus Nucleocapsid Proteins/*immunology[MESH]
  • |Epitopes, B-Lymphocyte/immunology[MESH]
  • |Epitopes, T-Lymphocyte/*immunology[MESH]
  • |HLA-A Antigens/immunology[MESH]
  • |HLA-B Antigens/immunology[MESH]
  • |HLA-C Antigens/immunology[MESH]
  • |Humans[MESH]
  • |Immunogenicity, Vaccine/immunology[MESH]
  • |Phosphoproteins/immunology[MESH]
  • |SARS-CoV-2/*immunology[MESH]


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