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10.7554/eLife.62522

http://scihub22266oqcxt.onion/10.7554/eLife.62522
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33164753!7688309!33164753
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suck abstract from ncbi


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pmid33164753      Elife 2020 ; 9 (ä): ä
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  • Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes #MMPMID33164753
  • Wang A; Chiou J; Poirion OB; Buchanan J; Valdez MJ; Verheyden JM; Hou X; Kudtarkar P; Narendra S; Newsome JM; Guo M; Faddah DA; Zhang K; Young RE; Barr J; Sajti E; Misra R; Huyck H; Rogers L; Poole C; Whitsett JA; Pryhuber G; Xu Y; Gaulton KJ; Preissl S; Sun X
  • Elife 2020[Nov]; 9 (ä): ä PMID33164753show ga
  • Respiratory failure associated with COVID-19 has placed focus on the lungs. Here, we present single-nucleus accessible chromatin profiles of 90,980 nuclei and matched single-nucleus transcriptomes of 46,500 nuclei in non-diseased lungs from donors of ~30 weeks gestation,~3 years and ~30 years. We mapped candidate cis-regulatory elements (cCREs) and linked them to putative target genes. We identified distal cCREs with age-increased activity linked to SARS-CoV-2 host entry gene TMPRSS2 in alveolar type 2 cells, which had immune regulatory signatures and harbored variants associated with respiratory traits. At the 3p21.31 COVID-19 risk locus, a candidate variant overlapped a distal cCRE linked to SLC6A20, a gene expressed in alveolar cells and with known functional association with the SARS-CoV-2 receptor ACE2. Our findings provide insight into regulatory logic underlying genes implicated in COVID-19 in individual lung cell types across age. More broadly, these datasets will facilitate interpretation of risk loci for lung diseases.
  • |Adult[MESH]
  • |Age Factors[MESH]
  • |Alveolar Epithelial Cells/classification/metabolism/virology[MESH]
  • |Angiotensin-Converting Enzyme 2/genetics/metabolism[MESH]
  • |COVID-19/*genetics/metabolism/*virology[MESH]
  • |Child, Preschool[MESH]
  • |Chromosome Mapping[MESH]
  • |Gene Expression Profiling[MESH]
  • |Genetic Variation[MESH]
  • |Host Microbial Interactions/*genetics/physiology[MESH]
  • |Humans[MESH]
  • |Infant, Newborn[MESH]
  • |Lung/*metabolism/*virology[MESH]
  • |Membrane Transport Proteins/genetics/metabolism[MESH]
  • |Pandemics[MESH]
  • |Receptors, Virus/genetics/metabolism[MESH]
  • |SARS-CoV-2/genetics/pathogenicity[MESH]
  • |Single-Cell Analysis[MESH]


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