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10.1016/j.ygeno.2020.11.003

http://scihub22266oqcxt.onion/10.1016/j.ygeno.2020.11.003
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suck abstract from ncbi


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pmid33161087      Genomics 2020 ; 112 (6): 5331-5342
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  • Trends of mutation accumulation across global SARS-CoV-2 genomes: Implications for the evolution of the novel coronavirus #MMPMID33161087
  • Roy C; Mandal SM; Mondal SK; Mukherjee S; Mapder T; Ghosh W; Chakraborty R
  • Genomics 2020[Nov]; 112 (6): 5331-5342 PMID33161087show ga
  • To understand SARS-CoV-2 microevolution, this study explored the genome-wide frequency, gene-wise distribution, and molecular nature of all point-mutations detected across its 71,703 RNA-genomes deposited in GISAID till 21 August 2020. Globally, nsp1/nsp2 and orf7a/orf3a were the most mutation-ridden non-structural and structural genes respectively. Phylogeny of 4618 spatiotemporally-representative genomes revealed that entities belonging to the early lineages are mostly spread over Asian countries, including India, whereas the recently-derived lineages are more globally distributed. Of the total 20,163 instances of polymorphism detected across global genomes, 12,594 and 7569 involved transitions and transversions, predominated by cytidine-to-uridine and guanosine-to-uridine conversions, respectively. Positive selection of nonsynonymous mutations (dN/dS >1) in most of the structural, but not the non-structural, genes indicated that SARS-CoV-2 has already harmonized its replication/transcription machineries with the host metabolism, while it is still redefining virulence/transmissibility strategies at the molecular level. Mechanistic bases and evolutionary/pathogenicity-related implications are discussed for the predominant mutation-types.
  • |*Evolution, Molecular[MESH]
  • |*Genome, Viral[MESH]
  • |*Mutation Accumulation[MESH]
  • |Asia[MESH]
  • |Genomics/methods[MESH]
  • |India[MESH]
  • |Mutation Rate[MESH]
  • |Mutation, Missense[MESH]
  • |Phylogeny[MESH]
  • |SARS-CoV-2/*genetics[MESH]
  • |Spike Glycoprotein, Coronavirus/genetics[MESH]
  • |Viral Proteins/genetics[MESH]


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