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10.1016/j.ijid.2020.10.079

http://scihub22266oqcxt.onion/10.1016/j.ijid.2020.10.079
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33130201!7598553!33130201
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suck abstract from ncbi


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pmid33130201      Int+J+Infect+Dis 2021 ; 102 (ä): 437-439
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  • Adjusting RT-qPCR conditions to avoid unspecific amplification in SARS-CoV-2 diagnosis #MMPMID33130201
  • Jaeger LH; Nascimento TC; Rocha FD; Vilela FMP; Duque APDN; Silva LM; Riani LR; Moreira JP; Chagas JMA; Pereira TV; Perches CGP; Watanabe ASA; Viccini LF; Silverio MS; Correa JODA; Pereira-Junior ODS; Pittella F
  • Int J Infect Dis 2021[Jan]; 102 (ä): 437-439 PMID33130201show ga
  • Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged in December 2019 and quickly spread around the world, forcing global health authorities to develop protocols for its diagnosis. Here we report dimer formation in the N2 primers-probe set (CDC 2019-nCoV Real-Time RT-PCR) used in the diagnostic routine, and propose alternatives to reduce dimerization events. Late unspecific amplifications were visualized in 56.4% of negative samples and 57.1% of no-template control, but not in positive samples or positive control. In silico analysis and gel electrophoresis confirmed the dimer formation. The RT-qPCR parameters were optimized and the late unspecific amplifications decreased to 11.5% in negative samples and no-template control. The adjustment of PCR parameters was essential to reduce the risk of false-positives results and to avoid inclusive results requiring repeat testing, which increases the costs and generates delays in results or even unnecessary requests for new samples.
  • |*SARS-CoV-2[MESH]
  • |COVID-19 Testing[MESH]
  • |COVID-19/*diagnosis[MESH]
  • |DNA Primers[MESH]
  • |Humans[MESH]
  • |RNA, Viral/analysis[MESH]
  • |Real-Time Polymerase Chain Reaction/*methods[MESH]


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