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10.1007/s10096-020-04076-3

http://scihub22266oqcxt.onion/10.1007/s10096-020-04076-3
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33104899!7587514!33104899
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suck abstract from ncbi


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pmid33104899      Eur+J+Clin+Microbiol+Infect+Dis 2021 ; 40 (4): 807-813
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  • Sensitive detection and quantification of SARS-CoV-2 by multiplex droplet digital RT-PCR #MMPMID33104899
  • de Kock R; Baselmans M; Scharnhorst V; Deiman B
  • Eur J Clin Microbiol Infect Dis 2021[Apr]; 40 (4): 807-813 PMID33104899show ga
  • The purpose of this study is to develop a one-step droplet digital RT-PCR (RT-ddPCR) multiplex assay that allows for sensitive quantification of SARS-CoV-2 RNA with respect to human-derived RNA and could be used for screening and monitoring of Covid-19 patients. A one-step RT-ddPCR multiplex assay was developed for simultaneous detection of SARS-CoV-2 E, RdRp and N viral RNA, and human Rpp30 DNA and GUSB mRNA, for internal nucleic acid (NA) extraction and RT-PCR control. Dilution series of viral RNA transcripts were prepared in water and total NA extract of Covid-19-negative patients. As reference assay, an E-GUSB duplex RT-PCR was used. GUSB mRNA detection was used to set validity criteria to assure viral RNA and RT-PCR assay quality and to enable quantification of SARS-CoV-2 RNA. In a background of at least 100 GUSB mRNA copies, 5 copies of viral RNA are reliably detectable and 10 copies viral RNA copies are reliably quantifiable. It was found that assay sensitivity of the RT-ddPCR was not affected by the total NA background while assay sensitivity of the gold standard RT-PCR assay is drastically decreased when SARS-CoV-2 copies were detected in a background of total NA extract compared with water. The present study describes a robust and sensitive one-step ddRT-PCR multiplex assay for reliable quantification of SARS-CoV-2 RNA. By determining the fractional abundance of viral RNA with respect to a human housekeeping gene, viral loads from different samples can be compared, what could be used to investigate the infectiveness and to monitor Covid-19 patients.
  • |Autoantigens/genetics[MESH]
  • |COVID-19 Nucleic Acid Testing/*methods[MESH]
  • |COVID-19/*diagnosis[MESH]
  • |Coronavirus Envelope Proteins/genetics[MESH]
  • |Coronavirus Nucleocapsid Proteins/genetics[MESH]
  • |Coronavirus RNA-Dependent RNA Polymerase/genetics[MESH]
  • |DNA/*analysis[MESH]
  • |Genes, Essential[MESH]
  • |Glucuronidase/genetics[MESH]
  • |Humans[MESH]
  • |Multiplex Polymerase Chain Reaction/*methods[MESH]
  • |Phosphoproteins/genetics[MESH]
  • |RNA, Messenger/*analysis[MESH]
  • |RNA, Viral/*analysis[MESH]
  • |Real-Time Polymerase Chain Reaction[MESH]
  • |Reverse Transcriptase Polymerase Chain Reaction/*methods[MESH]
  • |Ribonuclease P/genetics[MESH]
  • |SARS-CoV-2[MESH]


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