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10.1093/nar/gkaa880 http://scihub22266oqcxt.onion/10.1093/nar/gkaa880 33068412!7779053!33068412     free     free     free Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=33068412&cmd=llinks): Failed to open stream: HTTP request failed! 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RASP: an atlas of transcriptome-wide RNA secondary structure probing data |pdf=|usr=}}{{33068412}} gab.com Text RASP: an atlas of transcriptome-wide RNA secondary structure probing data JO: Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=33068412 #FOAvip RNA molecules fold into complex structures that are important across many biological processes. Recent technological developments have enabled transcriptome-wide probing of RNA secondary structure using nucleases and chemical modifiers. These approaches have been widely applied to capture RNA secondary structure in many studies, but gathering and presenting such data from very different technologies in a comprehensive and accessible way has been challenging. Existing RNA structure probing databases usually focus on low-throughput or very specific datasets. Here, we present a comprehensive RNA structure probing database called RASP (RNA Atlas of Structure Probing) by collecting 161 deduplicated transcriptome-wide RNA secondary structure probing datasets from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data. The database is freely available at http://rasp.zhanglab.net. Twit Text FOAVip RASP: an atlas of transcriptome-wide RNA secondary structure probing data ????Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=33068412 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=33068412 #FOAvip English Wikipedia <ref>{{Cite pmid|33068412}}</ref> RASP: an atlas of transcriptome-wide RNA secondary structure probing data #MMPMID33068412 Li P; Zhou X; Xu K; Zhang QC Nucleic Acids Res 2021[Jan]; 49 (D1): D183-D191 PMID33068412show ga RNA molecules fold into complex structures that are important across many biological processes. Recent technological developments have enabled transcriptome-wide probing of RNA secondary structure using nucleases and chemical modifiers. These approaches have been widely applied to capture RNA secondary structure in many studies, but gathering and presenting such data from very different technologies in a comprehensive and accessible way has been challenging. Existing RNA structure probing databases usually focus on low-throughput or very specific datasets. Here, we present a comprehensive RNA structure probing database called RASP (RNA Atlas of Structure Probing) by collecting 161 deduplicated transcriptome-wide RNA secondary structure probing datasets from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data. The database is freely available at http://rasp.zhanglab.net. |*Nucleic Acid Conformation[MESH] |*Transcriptome[MESH] |Animals[MESH] |COVID-19/epidemiology/prevention & control/virology[MESH] |Computational Biology/methods/*statistics & numerical data[MESH] |Databases, Genetic/*statistics & numerical data[MESH] |Genome, Viral/genetics[MESH] |High-Throughput Nucleotide Sequencing/methods/*statistics & numerical data[MESH] |Humans[MESH] |Pandemics[MESH] |RNA Probes/genetics[MESH] |RNA, Bacterial/chemistry/genetics[MESH] |RNA, Fungal/chemistry/genetics[MESH] |RNA, Plant/chemistry/genetics[MESH] |RNA, Viral/chemistry/genetics[MESH] |RNA/*chemistry/genetics[MESH]RASP: an atlas of transcriptome-wide RNA secondary structure probing d(epmc).pdf DeepDyve Pubget Overpricing