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10.1038/s41467-020-18709-w

http://scihub22266oqcxt.onion/10.1038/s41467-020-18709-w
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33028810!7542442!33028810
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suck abstract from ncbi


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pmid33028810      Nat+Commun 2020 ; 11 (1): 5047
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  • Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease #MMPMID33028810
  • Douangamath A; Fearon D; Gehrtz P; Krojer T; Lukacik P; Owen CD; Resnick E; Strain-Damerell C; Aimon A; Abranyi-Balogh P; Brandao-Neto J; Carbery A; Davison G; Dias A; Downes TD; Dunnett L; Fairhead M; Firth JD; Jones SP; Keeley A; Keseru GM; Klein HF; Martin MP; Noble MEM; O'Brien P; Powell A; Reddi RN; Skyner R; Snee M; Waring MJ; Wild C; London N; von Delft F; Walsh MA
  • Nat Commun 2020[Oct]; 11 (1): 5047 PMID33028810show ga
  • COVID-19, caused by SARS-CoV-2, lacks effective therapeutics. Additionally, no antiviral drugs or vaccines were developed against the closely related coronavirus, SARS-CoV-1 or MERS-CoV, despite previous zoonotic outbreaks. To identify starting points for such therapeutics, we performed a large-scale screen of electrophile and non-covalent fragments through a combined mass spectrometry and X-ray approach against the SARS-CoV-2 main protease, one of two cysteine viral proteases essential for viral replication. Our crystallographic screen identified 71 hits that span the entire active site, as well as 3 hits at the dimer interface. These structures reveal routes to rapidly develop more potent inhibitors through merging of covalent and non-covalent fragment hits; one series of low-reactivity, tractable covalent fragments were progressed to discover improved binders. These combined hits offer unprecedented structural and reactivity information for on-going structure-based drug design against SARS-CoV-2 main protease.
  • |Betacoronavirus/*chemistry/enzymology[MESH]
  • |Binding Sites[MESH]
  • |Catalytic Domain[MESH]
  • |Coronavirus 3C Proteases[MESH]
  • |Crystallography, X-Ray[MESH]
  • |Cysteine Endopeptidases/*chemistry/metabolism[MESH]
  • |Drug Design[MESH]
  • |Mass Spectrometry[MESH]
  • |Models, Molecular[MESH]
  • |Peptide Fragments/*chemistry/metabolism[MESH]
  • |Protein Conformation[MESH]
  • |SARS-CoV-2[MESH]
  • |Small Molecule Libraries/chemistry/metabolism[MESH]
  • |Static Electricity[MESH]


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