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10.1093/bioinformatics/btaa859 http://scihub22266oqcxt.onion/10.1093/bioinformatics/btaa859 33017003!7745649!33017003     free     free     free Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 219.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       Bioinformatics 2021 ; 37 (10): 1465-1467 Nephropedia Template TP {{tp|p=33017003|t=2021. VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data |pdf=|usr=}}{{33017003}} gab.com Text VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data JO: Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=33017003 #FOAvip SUMMARY: The possibility that RNA transcripts from clinical samples contain plenty of virus RNAs has not been pursued actively so far. We here developed a new tool for analyzing virus-transcribed mRNAs, not virus copy numbers, in the data of bulk and single-cell RNA-sequencing of human cells. Our pipeline, named VIRTUS (VIRal Transcript Usage Sensor), was able to detect 762 viruses including herpesviruses, retroviruses and even SARS-CoV-2 (COVID-19), and quantify their transcripts in the sequence data. This tool thus enabled simultaneously detecting infected cells, the composition of multiple viruses within the cell, and the endogenous host-gene expression profile of the cell. This bioinformatics method would be instrumental in addressing the possible effects of covertly infecting viruses on certain diseases and developing new treatments to target such viruses. AVAILABILITY AND IMPLEMENTATION: : VIRTUS is implemented using Common Workflow Language and Docker under a CC-NC license. VIRTUS is freely available at https://github.com/yyoshiaki/VIRTUS. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Twit Text FOAVip VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data ????Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=33017003 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=33017003 #FOAvip English Wikipedia <ref>{{Cite pmid|33017003}}</ref> VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data #MMPMID33017003 Yasumizu Y; Hara A; Sakaguchi S; Ohkura N Bioinformatics 2021[Jun]; 37 (10): 1465-1467 PMID33017003show ga SUMMARY: The possibility that RNA transcripts from clinical samples contain plenty of virus RNAs has not been pursued actively so far. We here developed a new tool for analyzing virus-transcribed mRNAs, not virus copy numbers, in the data of bulk and single-cell RNA-sequencing of human cells. Our pipeline, named VIRTUS (VIRal Transcript Usage Sensor), was able to detect 762 viruses including herpesviruses, retroviruses and even SARS-CoV-2 (COVID-19), and quantify their transcripts in the sequence data. This tool thus enabled simultaneously detecting infected cells, the composition of multiple viruses within the cell, and the endogenous host-gene expression profile of the cell. This bioinformatics method would be instrumental in addressing the possible effects of covertly infecting viruses on certain diseases and developing new treatments to target such viruses. AVAILABILITY AND IMPLEMENTATION: : VIRTUS is implemented using Common Workflow Language and Docker under a CC-NC license. VIRTUS is freely available at https://github.com/yyoshiaki/VIRTUS. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |*COVID-19[MESH] |*Software[MESH] |Humans[MESH] |RNA-Seq[MESH] |SARS-CoV-2[MESH]VIRTUS: a pipeline for comprehensive virus analysis from conventional (epmc).pdf DeepDyve Pubget Overpricing