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10.1016/j.virusres.2020.198173

http://scihub22266oqcxt.onion/10.1016/j.virusres.2020.198173
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suck abstract from ncbi


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pmid32979475      Virus+Res 2020 ; 290 (ä): 198173
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  • "Sample pooling of RNA extracts to speed up SARS-CoV-2 diagnosis using CDC FDA EUA RT-qPCR kit" #MMPMID32979475
  • Freire-Paspuel B; Vega-Marino P; Velez A; Cruz M; Garcia-Bereguiain MA
  • Virus Res 2020[Dec]; 290 (ä): 198173 PMID32979475show ga
  • BACKGROUND: The CDC protocol for SARS-CoV2 RT-PCR diagnosis (2019-nCoV CDC kit) is considered a gold standard worldwide; based on three different FAM probes (N1 and N2 for viral detection; RP for RNA extraction quality control), three reactions per sample are needed for SARS-CoV-2 diagnosis. RESULTS: We herein describe a sample pooling protocol: pooling 3 RNA extractions into a single PCR reaction; we tested this protocol with 114 specimens grouped in 38 pools and found no significant differences for N1 and N2 Ct values between pool and single sample PCR reaction. CONCLUSION: This pool of three protocol has a sensitivity of 100 % compared to the standard single sample protocol. For a typical 96-well plate, this pool assay allows 96 samples processing, speeding up diagnosis and reducing cost while maintaining clinical performance, particularly useful for SARS-CoV-2 diagnosis at developing countries.
  • |*COVID-19 Nucleic Acid Testing/economics[MESH]
  • |COVID-19/*diagnosis[MESH]
  • |Diagnostic Tests, Routine[MESH]
  • |Humans[MESH]
  • |Nasopharynx/virology[MESH]
  • |RNA, Viral/genetics[MESH]
  • |Reagent Kits, Diagnostic[MESH]
  • |Real-Time Polymerase Chain Reaction[MESH]
  • |SARS-CoV-2/genetics/*isolation & purification[MESH]
  • |Sensitivity and Specificity[MESH]
  • |Specimen Handling/*methods/standards[MESH]


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