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10.1021/acs.jproteome.0c00623

http://scihub22266oqcxt.onion/10.1021/acs.jproteome.0c00623
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32946692!ä!32946692

suck abstract from ncbi


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pmid32946692      J+Proteome+Res 2020 ; 19 (11): 4698-4705
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  • Structural Insights into the Binding Modes of Viral RNA-Dependent RNA Polymerases Using a Function-Site Interaction Fingerprint Method for RNA Virus Drug Discovery #MMPMID32946692
  • Zhao Z; Bourne PE
  • J Proteome Res 2020[Nov]; 19 (11): 4698-4705 PMID32946692show ga
  • The coronavirus disease of 2019 (COVID-19) pandemic speaks to the need for drugs that not only are effective but also remain effective given the mutation rate of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To this end, we describe structural binding-site insights for facilitating COVID-19 drug design when targeting RNA-dependent RNA polymerase (RDRP), a common conserved component of RNA viruses. We combined an RDRP structure data set, including 384 RDRP PDB structures and all corresponding RDRP-ligand interaction fingerprints, thereby revealing the structural characteristics of the active sites for application to RDRP-targeted drug discovery. Specifically, we revealed the intrinsic ligand-binding modes and associated RDRP structural characteristics. Four types of binding modes with corresponding binding pockets were determined, suggesting two major subpockets available for drug discovery. We screened a drug data set of 7894 compounds against these binding pockets and presented the top-10 small molecules as a starting point in further exploring the prevention of virus replication. In summary, the binding characteristics determined here help rationalize RDRP-targeted drug discovery and provide insights into the specific binding mechanisms important for containing the SARS-CoV-2 virus.
  • |*Betacoronavirus/chemistry/metabolism[MESH]
  • |*RNA-Dependent RNA Polymerase/chemistry/metabolism[MESH]
  • |*Viral Proteins/chemistry/metabolism[MESH]
  • |Binding Sites[MESH]
  • |COVID-19[MESH]
  • |Coronavirus Infections/*virology[MESH]
  • |Drug Discovery/*methods[MESH]
  • |Humans[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Pandemics[MESH]
  • |Pneumonia, Viral/*virology[MESH]
  • |Protein Binding[MESH]


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