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10.1038/s41598-020-70864-8

http://scihub22266oqcxt.onion/10.1038/s41598-020-70864-8
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suck abstract from ncbi


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pmid32843695      Sci+Rep 2020 ; 10 (1): 14179
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  • Immunoinformatic identification of B cell and T cell epitopes in the SARS-CoV-2 proteome #MMPMID32843695
  • Crooke SN; Ovsyannikova IG; Kennedy RB; Poland GA
  • Sci Rep 2020[Aug]; 10 (1): 14179 PMID32843695show ga
  • A novel coronavirus (SARS-CoV-2) emerged from China in late 2019 and rapidly spread across the globe, infecting millions of people and generating societal disruption on a level not seen since the 1918 influenza pandemic. A safe and effective vaccine is desperately needed to prevent the continued spread of SARS-CoV-2; yet, rational vaccine design efforts are currently hampered by the lack of knowledge regarding viral epitopes targeted during an immune response, and the need for more in-depth knowledge on betacoronavirus immunology. To that end, we developed a computational workflow using a series of open-source algorithms and webtools to analyze the proteome of SARS-CoV-2 and identify putative T cell and B cell epitopes. Utilizing a set of stringent selection criteria to filter peptide epitopes, we identified 41 T cell epitopes (5 HLA class I, 36 HLA class II) and 6 B cell epitopes that could serve as promising targets for peptide-based vaccine development against this emerging global pathogen. To our knowledge, this is the first study to comprehensively analyze all 10 (structural, non-structural and accessory) proteins from SARS-CoV-2 using predictive algorithms to identify potential targets for vaccine development.
  • |*Computational Biology/methods[MESH]
  • |Amino Acid Sequence[MESH]
  • |B-Lymphocytes/immunology/metabolism[MESH]
  • |Betacoronavirus/classification/genetics/*immunology/metabolism[MESH]
  • |COVID-19[MESH]
  • |Coronavirus Infections/*immunology/metabolism/*virology[MESH]
  • |Epitopes, B-Lymphocyte/chemistry/*immunology[MESH]
  • |Epitopes, T-Lymphocyte/chemistry/*immunology[MESH]
  • |Genome, Viral[MESH]
  • |Genomics/methods[MESH]
  • |Host-Pathogen Interactions/*immunology[MESH]
  • |Humans[MESH]
  • |Models, Molecular[MESH]
  • |Pandemics[MESH]
  • |Peptides/chemistry/immunology[MESH]
  • |Phylogeny[MESH]
  • |Pneumonia, Viral/*immunology/metabolism/*virology[MESH]
  • |SARS-CoV-2[MESH]
  • |Structure-Activity Relationship[MESH]
  • |T-Lymphocytes/immunology/metabolism[MESH]
  • |Vaccines, Subunit/immunology[MESH]
  • |Viral Proteins/chemistry/*immunology[MESH]


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