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10.1007/s12104-020-09973-4

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suck abstract from ncbi


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pmid32803496      Biomol+NMR+Assign 2020 ; 14 (2): 339-346
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  • (1)H, (13)C, and (15)N backbone chemical shift assignments of the apo and the ADP-ribose bound forms of the macrodomain of SARS-CoV-2 non-structural protein 3b #MMPMID32803496
  • Cantini F; Banci L; Altincekic N; Bains JK; Dhamotharan K; Fuks C; Furtig B; Gande SL; Hargittay B; Hengesbach M; Hutchison MT; Korn SM; Kubatova N; Kutz F; Linhard V; Lohr F; Meiser N; Pyper DJ; Qureshi NS; Richter C; Saxena K; Schlundt A; Schwalbe H; Sreeramulu S; Tants JN; Wacker A; Weigand JE; Wohnert J; Tsika AC; Fourkiotis NK; Spyroulias GA
  • Biomol NMR Assign 2020[Oct]; 14 (2): 339-346 PMID32803496show ga
  • The SARS-CoV-2 genome encodes for approximately 30 proteins. Within the international project COVID19-NMR, we distribute the spectroscopic analysis of the viral proteins and RNA. Here, we report NMR chemical shift assignments for the protein Nsp3b, a domain of Nsp3. The 217-kDa large Nsp3 protein contains multiple structurally independent, yet functionally related domains including the viral papain-like protease and Nsp3b, a macrodomain (MD). In general, the MDs of SARS-CoV and MERS-CoV were suggested to play a key role in viral replication by modulating the immune response of the host. The MDs are structurally conserved. They most likely remove ADP-ribose, a common posttranslational modification, from protein side chains. This de-ADP ribosylating function has potentially evolved to protect the virus from the anti-viral ADP-ribosylation catalyzed by poly-ADP-ribose polymerases (PARPs), which in turn are triggered by pathogen-associated sensing of the host immune system. This renders the SARS-CoV-2 Nsp3b a highly relevant drug target in the viral replication process. We here report the near-complete NMR backbone resonance assignment ((1)H, (13)C, (15)N) of the putative Nsp3b MD in its apo form and in complex with ADP-ribose. Furthermore, we derive the secondary structure of Nsp3b in solution. In addition, (15)N-relaxation data suggest an ordered, rigid core of the MD structure. These data will provide a basis for NMR investigations targeted at obtaining small-molecule inhibitors interfering with the catalytic activity of Nsp3b.
  • |*Carbon-13 Magnetic Resonance Spectroscopy[MESH]
  • |*Proton Magnetic Resonance Spectroscopy[MESH]
  • |Adenosine Diphosphate Ribose/*metabolism[MESH]
  • |Amino Acid Sequence[MESH]
  • |Apoproteins/*chemistry/metabolism[MESH]
  • |Betacoronavirus/*metabolism[MESH]
  • |Nitrogen Isotopes/*chemistry[MESH]
  • |Protein Domains[MESH]
  • |Protein Structure, Secondary[MESH]
  • |SARS-CoV-2[MESH]


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