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10.1007/s00705-020-04744-x

http://scihub22266oqcxt.onion/10.1007/s00705-020-04744-x
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32715325!7382918!32715325
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suck abstract from ncbi


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pmid32715325      Arch+Virol 2020 ; 165 (10): 2323-2333
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  • Characteristics of the spike and ORF3 genes of porcine epidemic diarrhea virus in Henan and Shanxi provinces of China #MMPMID32715325
  • Cui JT; Qiao H; Hou CY; Zheng HH; Li XS; Zheng LL; Chen HY
  • Arch Virol 2020[Oct]; 165 (10): 2323-2333 PMID32715325show ga
  • To investigate the epidemic characteristics of porcine epidemic diarrhea virus (PEDV), 135 clinical samples (including intestinal tissues and feces) were collected from diseased piglets during outbreaks of diarrhea from 2015 to 2019 on farms in Henan and Shanxi provinces of China where swine had been immunized with attenuated PEDV (CV777). A total of 86 clinical samples (86/135, 63.7%) were positive for PEDV by RT-PCR, and subsequently, the complete spike (S) and ORF3 genes of 32 PEDV samples were sequenced. Phylogenetic analysis showed that the 32 PEDV strains obtained in this study belonged to group 2 (pandemic variant strains) and had a close relationship to 17 Chinese strains after 2010, two South Korean strains (KNU-1305 and KNU-1807), three American strains (PC22A-P140.BI, USA/Colorado/2013, and USA/OK10240-6/2017) and a Mexican strain (PEDV/MEX/QRO/02/2017), but differed genetically from a South Korean strain (SM98), a European strain (Br1/87), a Chinese strain (LZC), and a vaccine strain (CV777). G2-a subgroup strains were the dominant pandemic variant strains circulating in Henan and Shanxi provinces of China. Furthermore, a cross-recombination event was identified in the S region of the SX/TY2/2017 strain, and the putative parental strains were the epidemic strains CH/GDGZ/2012 and CH/YZ1/2015, identified in China in 2012 and 2015, respectively. These results provide further information about PEDV evolution, which could improve our understanding of the circulation of PEDV in Henan and Shanxi provinces. This information will also be helpful for developing new strategies for prevention and control of variant strains.
  • |*Disease Outbreaks[MESH]
  • |*Genome, Viral[MESH]
  • |Animals[MESH]
  • |China/epidemiology[MESH]
  • |Coronavirus Infections/epidemiology/transmission/*veterinary/virology[MESH]
  • |Diarrhea/epidemiology/*veterinary/virology[MESH]
  • |Farms[MESH]
  • |Feces/virology[MESH]
  • |Genetic Variation[MESH]
  • |Intestines/virology[MESH]
  • |Phylogeny[MESH]
  • |Porcine epidemic diarrhea virus/classification/*genetics/isolation & purification[MESH]
  • |Recombination, Genetic[MESH]
  • |Spike Glycoprotein, Coronavirus/*genetics[MESH]
  • |Swine Diseases/*epidemiology/transmission/virology[MESH]
  • |Swine/virology[MESH]


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