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10.1016/j.cell.2020.05.006

http://scihub22266oqcxt.onion/10.1016/j.cell.2020.05.006
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32479746!7205692!32479746
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suck abstract from ncbi


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pmid32479746      Cell 2020 ; 181 (7): 1475-1488.e12
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  • Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients #MMPMID32479746
  • Bost P; Giladi A; Liu Y; Bendjelal Y; Xu G; David E; Blecher-Gonen R; Cohen M; Medaglia C; Li H; Deczkowska A; Zhang S; Schwikowski B; Zhang Z; Amit I
  • Cell 2020[Jun]; 181 (7): 1475-1488.e12 PMID32479746show ga
  • Viruses are a constant threat to global health as highlighted by the current COVID-19 pandemic. Currently, lack of data underlying how the human host interacts with viruses, including the SARS-CoV-2 virus, limits effective therapeutic intervention. We introduce Viral-Track, a computational method that globally scans unmapped single-cell RNA sequencing (scRNA-seq) data for the presence of viral RNA, enabling transcriptional cell sorting of infected versus bystander cells. We demonstrate the sensitivity and specificity of Viral-Track to systematically detect viruses from multiple models of infection, including hepatitis B virus, in an unsupervised manner. Applying Viral-Track to bronchoalveloar-lavage samples from severe and mild COVID-19 patients reveals a dramatic impact of the virus on the immune system of severe patients compared to mild cases. Viral-Track detects an unexpected co-infection of the human metapneumovirus, present mainly in monocytes perturbed in type-I interferon (IFN)-signaling. Viral-Track provides a robust technology for dissecting the mechanisms of viral-infection and pathology.
  • |*Host-Pathogen Interactions[MESH]
  • |*Software[MESH]
  • |Animals[MESH]
  • |Betacoronavirus/isolation & purification[MESH]
  • |COVID-19[MESH]
  • |Coinfection/immunology[MESH]
  • |Coronavirus Infections/immunology/pathology/*physiopathology/virology[MESH]
  • |Humans[MESH]
  • |Interferons/immunology[MESH]
  • |Lung/pathology[MESH]
  • |Pandemics[MESH]
  • |Pneumonia, Viral/immunology/pathology/*physiopathology/virology[MESH]
  • |SARS-CoV-2[MESH]
  • |Sensitivity and Specificity[MESH]
  • |Sequence Analysis, RNA[MESH]
  • |Severity of Illness Index[MESH]


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