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10.1080/22221751.2020.1772679

http://scihub22266oqcxt.onion/10.1080/22221751.2020.1772679
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suck abstract from ncbi


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pmid32448084      Emerg+Microbes+Infect 2020 ; 9 (1): 1175-1179
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  • Analytical comparisons of SARS-COV-2 detection by qRT-PCR and ddPCR with multiple primer/probe sets #MMPMID32448084
  • Liu X; Feng J; Zhang Q; Guo D; Zhang L; Suo T; Hu W; Guo M; Wang X; Huang Z; Xiong Y; Chen G; Chen Y; Lan K
  • Emerg Microbes Infect 2020[Dec]; 9 (1): 1175-1179 PMID32448084show ga
  • Different primers/probes sets have been developed all over the world for the nucleic acid detection of SARS-CoV-2 by quantitative real time polymerase chain reaction (qRT-PCR) as a standard method. In our recent study, we explored the feasibility of droplet digital PCR (ddPCR) for clinical SARS-CoV-2 nucleic acid detection compared with qRT-PCR using the same primer/probe sets issued by Chinese Center for Disease Control and Prevention (CDC) targeting viral ORF1ab or N gene, which showed that ddPCR could largely minimize the false negatives reports resulted by qRT-PCR [Suo T, Liu X, Feng J, et al. ddPCR: a more sensitive and accurate tool for SARS-CoV-2 detection in low viral load specimens. medRxiv [Internet]. 2020;2020.02.29.20029439. Available from: https://medrxiv.org/content/early/2020/03/06/2020.02.29.20029439.abstract]. Here, we further stringently compared the performance of qRT-PCR and ddPCR for 8 primer/probe sets with the same clinical samples and conditions. Results showed that none of 8 primer/probe sets used in qRT-PCR could significantly distinguish true negatives and positives with low viral load (10(-4) dilution). Moreover, false positive reports of qRT-PCR with UCDC-N1, N2 and CCDC-N primers/probes sets were observed. In contrast, ddPCR showed significantly better performance in general for low viral load samples compared to qRT-PCR. Remarkably, the background readouts of ddPCR are relatively lower, which could efficiently reduce the production of false positive reports.
  • |*Multiplex Polymerase Chain Reaction/methods[MESH]
  • |*Real-Time Polymerase Chain Reaction/methods/standards[MESH]
  • |Betacoronavirus/*genetics[MESH]
  • |COVID-19[MESH]
  • |Coronavirus Infections/*diagnosis/*virology[MESH]
  • |DNA Primers[MESH]
  • |DNA Probes[MESH]
  • |Humans[MESH]
  • |Pandemics[MESH]
  • |Pneumonia, Viral/*diagnosis/*virology[MESH]
  • |SARS-CoV-2[MESH]
  • |Sensitivity and Specificity[MESH]


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