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10.1093/nar/gkaa413 http://scihub22266oqcxt.onion/10.1093/nar/gkaa413 32442274!7319573!32442274     free     free     free Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       Nucleic+Acids+Res 2020 ; 48 (W1): W366-W371 Nephropedia Template TP {{tp|p=32442274|t=2020. NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline |pdf=|usr=}}{{32442274}} gab.com Text NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline JO: Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=32442274 #FOAvip Metagenomic sequencing combined with Oxford Nanopore Technology has the potential to become a point-of-care test for infectious disease in public health and clinical settings, providing rapid diagnosis of infection, guiding individual patient management and treatment strategies, and informing infection prevention and control practices. However, publicly available, streamlined, and reproducible pipelines for analyzing Nanopore metagenomic sequencing data are still lacking. Here we introduce NanoSPC, a scalable, portable and cloud compatible pipeline for analyzing Nanopore sequencing data. NanoSPC can identify potentially pathogenic viruses and bacteria simultaneously to provide comprehensive characterization of individual samples. The pipeline can also detect single nucleotide variants and assemble high quality complete consensus genome sequences, permitting high-resolution inference of transmission. We implement NanoSPC using Nextflow manager within Docker images to allow reproducibility and portability of the analysis. Moreover, we deploy NanoSPC to our scalable pathogen pipeline platform, enabling elastic computing for high throughput Nanopore data on HPC cluster as well as multiple cloud platforms, such as Google Cloud, Amazon Elastic Computing Cloud, Microsoft Azure and OpenStack. Users could either access our web interface (https://nanospc.mmmoxford.uk) to run cloud-based analysis, monitor process, and visualize results, as well as download Docker images and run command line to analyse data locally. Twit Text FOAVip NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline ????Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=32442274 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=32442274 #FOAvip English Wikipedia <ref>{{Cite pmid|32442274}}</ref> NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline #MMPMID32442274 Xu Y; Yang-Turner F; Volk D; Crook D Nucleic Acids Res 2020[Jul]; 48 (W1): W366-W371 PMID32442274show ga Metagenomic sequencing combined with Oxford Nanopore Technology has the potential to become a point-of-care test for infectious disease in public health and clinical settings, providing rapid diagnosis of infection, guiding individual patient management and treatment strategies, and informing infection prevention and control practices. However, publicly available, streamlined, and reproducible pipelines for analyzing Nanopore metagenomic sequencing data are still lacking. Here we introduce NanoSPC, a scalable, portable and cloud compatible pipeline for analyzing Nanopore sequencing data. NanoSPC can identify potentially pathogenic viruses and bacteria simultaneously to provide comprehensive characterization of individual samples. The pipeline can also detect single nucleotide variants and assemble high quality complete consensus genome sequences, permitting high-resolution inference of transmission. We implement NanoSPC using Nextflow manager within Docker images to allow reproducibility and portability of the analysis. Moreover, we deploy NanoSPC to our scalable pathogen pipeline platform, enabling elastic computing for high throughput Nanopore data on HPC cluster as well as multiple cloud platforms, such as Google Cloud, Amazon Elastic Computing Cloud, Microsoft Azure and OpenStack. Users could either access our web interface (https://nanospc.mmmoxford.uk) to run cloud-based analysis, monitor process, and visualize results, as well as download Docker images and run command line to analyse data locally. |*Genome, Viral[MESH] |*Software[MESH] |Bacteria/genetics/isolation & purification[MESH] |Cloud Computing[MESH] |Metagenomics/*methods[MESH] |Nanopore Sequencing/*methods[MESH]NanoSPC: a scalable, portable, cloud compatible viral nanopore metagen(epmc).pdf DeepDyve Pubget Overpricing