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10.1021/acs.jpclett.0c00994

http://scihub22266oqcxt.onion/10.1021/acs.jpclett.0c00994
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32406687!ä!32406687

suck abstract from ncbi


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pmid32406687      J+Phys+Chem+Lett 2020 ; 11 (11): 4413-4420
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  • In Silico Exploration of the Molecular Mechanism of Clinically Oriented Drugs for Possibly Inhibiting SARS-CoV-2 s Main Protease #MMPMID32406687
  • Huynh T; Wang H; Luan B
  • J Phys Chem Lett 2020[Jun]; 11 (11): 4413-4420 PMID32406687show ga
  • Currently, the new coronavirus disease 2019 (COVID-19) is a global pandemic without any well-calibrated treatment. To inactivate the SARS-CoV-2 virus that causes COVID-19, the main protease (Mpro) that performs key biological functions in the virus has been the focus of extensive studies. With the fast-response experimental efforts, the crystal structures of Mpro of the SARS-CoV-2 virus have just become available recently. Herein, we theoretically investigated the mechanism of binding between the Mpro's pocket and various marketed drug molecules being tested in clinics to fight COVID-19 that show promising outcomes. By combining the existing experimental results with our computational ones, we revealed an important ligand binding mechanism of the Mpro, demonstrating that the binding stability of a ligand inside the Mpro pocket can be significantly improved if part of the ligand occupies its so-called "anchor" site. Along with the highly potent drugs and/or molecules (such as nelfinavir) revealed in this study, the newly discovered binding mechanism paves the way for further optimizations and designs of Mpro's inhibitors with a high binding affinity.
  • |Betacoronavirus/isolation & purification[MESH]
  • |Binding Sites[MESH]
  • |COVID-19[MESH]
  • |Coronavirus 3C Proteases[MESH]
  • |Coronavirus Infections/*drug therapy/pathology/virology[MESH]
  • |Cysteine Endopeptidases/*chemistry/metabolism[MESH]
  • |Drug Design[MESH]
  • |Humans[MESH]
  • |Ligands[MESH]
  • |Molecular Dynamics Simulation[MESH]
  • |Pandemics[MESH]
  • |Pneumonia, Viral/*drug therapy/pathology/virology[MESH]
  • |Protease Inhibitors/*chemistry/metabolism[MESH]
  • |Protein Structure, Tertiary[MESH]
  • |SARS-CoV-2[MESH]


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