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10.1002/jmv.24780

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28191658!7166611!28191658
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suck abstract from ncbi


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pmid28191658      J+Med+Virol 2017 ; 89 (8): 1330-1338
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  • Interpatient mutational spectrum of human coronavirus-OC43 revealed by illumina sequencing #MMPMID28191658
  • Gorse GJ; Patel GB; Fan X
  • J Med Virol 2017[Aug]; 89 (8): 1330-1338 PMID28191658show ga
  • Human coronaviruses (HCoV) are RNA viruses that cause respiratory tract infections with viral replication of limited duration. The host and viral population heterogeneity could influence clinical phenotypes. Employing long RT-PCR with Illumina sequencing, we quantified the gene mutation load at 0.5% mutation frequency for the 4529 bp-domain spanning the Spike gene (4086 bp) of HCoV-OC43 in four upper respiratory clinical specimens obtained during acute illness. There were a total of 121 mutations for all four HCoV samples with the average number of mutations at 30.3 +/- 10.2, which is significantly higher than that expected from the Illumina sequencing error rate. There were two mutation peaks, one at the 5' end and the other near position 1 550 in the S1 subunit. Two coronavirus samples were genotype B and two were genotype D, clustering with HCoV-OC43 strain AY391777 in neighbor-joining tree phylogenetic analysis. Nonsynonymous mutations were 76.1 +/- 14% of mutation load. Although lower than other RNA viruses such as hepatitis C virus, HCoV-OC43 did exhibit quasi-species. The rate of nonsynonymous mutations was higher in the HCoV-OC43 isolates than in hepatitis C (HCV) virus genotype 1a isolates analyzed for comparison in this study. These characteristics of HCoV-OC43 may affect viral replication dynamics, receptor binding, antigenicity, evolution, transmission, and clinical illness.
  • |*Genetic Variation[MESH]
  • |*Mutation[MESH]
  • |Adult[MESH]
  • |Aged, 80 and over[MESH]
  • |Cluster Analysis[MESH]
  • |Coronavirus Infections/*virology[MESH]
  • |Coronavirus OC43, Human/*classification/*genetics/isolation & purification[MESH]
  • |Genotype[MESH]
  • |Humans[MESH]
  • |Male[MESH]
  • |Middle Aged[MESH]
  • |Mutation Rate[MESH]
  • |Phylogeny[MESH]
  • |Reverse Transcriptase Polymerase Chain Reaction[MESH]
  • |Sequence Analysis, DNA[MESH]


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