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10.1038/gim.2016.158

http://scihub22266oqcxt.onion/10.1038/gim.2016.158
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27735924!6377944!27735924
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suck abstract from ncbi


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pmid27735924      Genet+Med 2017 ; 19 (6): 643-651
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  • Copy-number variation is an important contributor to the genetic causality of inherited retinal degenerations #MMPMID27735924
  • Bujakowska KM; Fernandez-Godino R; Place E; Consugar M; Navarro-Gomez D; White J; Bedoukian EC; Zhu X; Xie HM; Gai X; Leroy BP; Pierce EA
  • Genet Med 2017[Jun]; 19 (6): 643-651 PMID27735924show ga
  • PURPOSE: Despite substantial progress in sequencing, current strategies can genetically solve only approximately 55-60% of inherited retinal degeneration (IRD) cases. This can be partially attributed to elusive mutations in the known IRD genes, which are not easily identified by the targeted next-generation sequencing (NGS) or Sanger sequencing approaches. We hypothesized that copy-number variations (CNVs) are a major contributor to the elusive genetic causality of IRDs. METHODS: Twenty-eight cases previously unsolved with a targeted NGS were investigated with whole-genome single-nucleotide polymorphism (SNP) and comparative genomic hybridization (CGH) arrays. RESULTS: Deletions in the IRD genes were detected in 5 of 28 families, including a de novo deletion. We suggest that the de novo deletion occurred through nonallelic homologous recombination (NAHR) and we constructed a genomic map of NAHR-prone regions with overlapping IRD genes. In this article, we also report an unusual case of recessive retinitis pigmentosa due to compound heterozygous mutations in SNRNP200, a gene that is typically associated with the dominant form of this disease. CONCLUSIONS: CNV mapping substantially increased the genetic diagnostic rate of IRDs, detecting genetic causality in 18% of previously unsolved cases. Extending the search to other structural variations will probably demonstrate an even higher contribution to genetic causality of IRDs.Genet Med advance online publication 13 October 2016.
  • |*DNA Copy Number Variations[MESH]
  • |Adolescent[MESH]
  • |Child[MESH]
  • |Chromosome Mapping[MESH]
  • |Cohort Studies[MESH]
  • |Comparative Genomic Hybridization[MESH]
  • |Family Health[MESH]
  • |Female[MESH]
  • |Gene Deletion[MESH]
  • |Genetic Predisposition to Disease[MESH]
  • |Genome[MESH]
  • |Humans[MESH]
  • |Male[MESH]
  • |Middle Aged[MESH]
  • |Polymorphism, Single Nucleotide[MESH]


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