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10.1371/journal.pone.0133280

http://scihub22266oqcxt.onion/10.1371/journal.pone.0133280
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C4514710!4514710 !26208222
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suck abstract from ncbi

pmid26208222
      PLoS+One 2015 ; 10 (7 ): e0133280
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  • c-Myb Binding Sites in Haematopoietic Chromatin Landscapes #MMPMID26208222
  • Bengtsen M ; Klepper K ; Gundersen S ; Cuervo I ; Drabløs F ; Hovig E ; Sandve GK ; Gabrielsen OS ; Eskeland R
  • PLoS One 2015[]; 10 (7 ): e0133280 PMID26208222 show ga
  • Strict control of tissue-specific gene expression plays a pivotal role during lineage commitment. The transcription factor c-Myb has an essential role in adult haematopoiesis and functions as an oncogene when rearranged in human cancers. Here we have exploited digital genomic footprinting analysis to obtain a global picture of c-Myb occupancy in the genome of six different haematopoietic cell-types. We have biologically validated several c-Myb footprints using c-Myb knockdown data, reporter assays and DamID analysis. We show that our predicted conserved c-Myb footprints are highly dependent on the haematopoietic cell type, but that there is a group of gene targets common to all cell-types analysed. Furthermore, we find that c-Myb footprints co-localise with active histone mark H3K4me3 and are significantly enriched at exons. We analysed co-localisation of c-Myb footprints with 104 chromatin regulatory factors in K562 cells, and identified nine proteins that are enriched together with c-Myb footprints on genes positively regulated by c-Myb and one protein enriched on negatively regulated genes. Our data suggest that c-Myb is a transcription factor with multifaceted target regulation depending on cell type.
  • |*Binding Sites [MESH]
  • |Cell Differentiation/genetics [MESH]
  • |Chromatin/*genetics/*metabolism [MESH]
  • |DNA Footprinting [MESH]
  • |Gene Expression Regulation [MESH]
  • |Genome-Wide Association Study [MESH]
  • |Hematopoiesis/*genetics [MESH]
  • |Histones/metabolism [MESH]
  • |Humans [MESH]
  • |K562 Cells [MESH]
  • |Protein Binding [MESH]
  • |Proto-Oncogene Proteins c-myb/*metabolism [MESH]
  • |Transcription Factors/metabolism [MESH]


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