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2014 ; 30
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): 1926-7
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The Bio-Community Perl toolkit for microbial ecology
#MMPMID24618462
Angly FE
; Fields CJ
; Tyson GW
Bioinformatics
2014[Jul]; 30
(13
): 1926-7
PMID24618462
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The development of bioinformatic solutions for microbial ecology in Perl is
limited by the lack of modules to represent and manipulate microbial community
profiles from amplicon and meta-omics studies. Here we introduce Bio-Community,
an open-source, collaborative toolkit that extends BioPerl. Bio-Community
interfaces with commonly used programs using various file formats, including
BIOM, and provides operations such as rarefaction and taxonomic summaries.
Bio-Community will help bioinformaticians to quickly piece together custom
analysis pipelines and develop novel software. Availability an implementation:
Bio-Community is cross-platform Perl code available from
http://search.cpan.org/dist/Bio-Community under the Perl license. A readme file
describes software installation and how to contribute.