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2010 ; 10
(1
): 84-94
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Template-based protein modeling: recent methodological advances
#MMPMID19929829
Daga PR
; Patel RY
; Doerksen RJ
Curr Top Med Chem
2010[]; 10
(1
): 84-94
PMID19929829
show ga
Protein modeling has been a very challenging problem in drug discovery and
computational biology. The latest advances and progress in computational power
have helped to solve this problem to a considerable extent; however, predicting
accurate three-dimensional structure of proteins has always been and remains a
complicated assignment. Of the two common methods of protein structure
prediction, template-based modeling has become more popular than ab initio
modeling. In this review, we summarize the developments in methodology and of
understanding for comparative protein modeling during the last three years,
including for homologue search, fold recognition, secondary structure prediction,
model building, loop building, side-chain prediction and model quality
assessment.