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10.1016/j.bpj.2016.06.031

http://scihub22266oqcxt.onion/10.1016/j.bpj.2016.06.031
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suck abstract from ncbi


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pmid27602721
      Biophys+J 2016 ; 111 (5 ): 925-36
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  • Structure-Based Prediction of Protein-Folding Transition Paths #MMPMID27602721
  • Jacobs WM ; Shakhnovich EI
  • Biophys J 2016[Sep]; 111 (5 ): 925-36 PMID27602721 show ga
  • We propose a general theory to describe the distribution of protein-folding transition paths. We show that transition paths follow a predictable sequence of high-free-energy transient states that are separated by free-energy barriers. Each transient state corresponds to the assembly of one or more discrete, cooperative units, which are determined directly from the native structure. We show that the transition state on a folding pathway is reached when a small number of critical contacts are formed between a specific set of substructures, after which folding proceeds downhill in free energy. This approach suggests a natural resolution for distinguishing parallel folding pathways and provides a simple means to predict the rate-limiting step in a folding reaction. Our theory identifies a common folding mechanism for proteins with diverse native structures and establishes general principles for the self-assembly of polymers with specific interactions.
  • |*Models, Molecular [MESH]
  • |*Protein Folding [MESH]
  • |Algorithms [MESH]
  • |Kinetics [MESH]
  • |Protein Stability [MESH]
  • |Structure-Activity Relationship [MESH]


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