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10.1371/journal.pone.0153022 http://scihub22266oqcxt.onion/10.1371/journal.pone.0153022 C4818086!4818086 !27035711     free     free     free Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=27035711 &cmd=llinks): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 215 Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\27035711 .jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       PLoS+One 2016 ; 11 (4 ): e0153022 Nephropedia Template TP {{tp|p=27035711 |t=2016. SAMA: A Method for 3D Morphological Analysis |pdf=|usr=}}{{27035711 }} gab.com Text SAMA: A Method for 3D Morphological Analysis JO: PLoS One http://www.kidney.de/pget.php?&tw=1&pmid=27035711 #FOAvip Three-dimensional (3D) culture models are critical tools for understanding tissue morphogenesis. A key requirement for their analysis is the ability to reconstruct the tissue into computational models that allow quantitative evaluation of the formed structures. Here, we present Software for Automated Morphological Analysis (SAMA), a method by which epithelial structures grown in 3D cultures can be imaged, reconstructed and analyzed with minimum human intervention. SAMA allows quantitative analysis of key features of epithelial morphogenesis such as ductal elongation, branching and lumen formation that distinguish different hormonal treatments. SAMA is a user-friendly set of customized macros operated via FIJI (http://fiji.sc/Fiji), an open-source image analysis platform in combination with a set of functions in R (http://www.r-project.org/), an open-source program for statistical analysis. SAMA enables a rapid, exhaustive and quantitative 3D analysis of the shape of a population of structures in a 3D image. SAMA is cross-platform, licensed under the GPLv3 and available at http://montevil.theobio.org/content/sama. Twit Text FOAVip SAMA: A Method for 3D Morphological Analysis ????PLoS One http://www.kidney.de/pget.php?&tw=1&pmid=27035711 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=27035711 #FOAvip English Wikipedia <ref>{{Cite pmid|27035711 }}</ref> SAMA: A Method for 3D Morphological Analysis #MMPMID27035711 Paulose T ; Montévil M ; Speroni L ; Cerruti F ; Sonnenschein C ; Soto AM PLoS One 2016[]; 11 (4 ): e0153022 PMID27035711 show ga Three-dimensional (3D) culture models are critical tools for understanding tissue morphogenesis. A key requirement for their analysis is the ability to reconstruct the tissue into computational models that allow quantitative evaluation of the formed structures. Here, we present Software for Automated Morphological Analysis (SAMA), a method by which epithelial structures grown in 3D cultures can be imaged, reconstructed and analyzed with minimum human intervention. SAMA allows quantitative analysis of key features of epithelial morphogenesis such as ductal elongation, branching and lumen formation that distinguish different hormonal treatments. SAMA is a user-friendly set of customized macros operated via FIJI (http://fiji.sc/Fiji), an open-source image analysis platform in combination with a set of functions in R (http://www.r-project.org/), an open-source program for statistical analysis. SAMA enables a rapid, exhaustive and quantitative 3D analysis of the shape of a population of structures in a 3D image. SAMA is cross-platform, licensed under the GPLv3 and available at http://montevil.theobio.org/content/sama. |*Automation [MESH] |*Morphogenesis [MESH] |*Software [MESH] |Epithelial Cells/cytology [MESH]SAMA: A Method for 3D Morphological Analysis (epmc).pdf DeepDyve Pubget Overpricing