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PhenoImageShare: an image annotation and query infrastructure
#MMPMID27267125
Adebayo S
; McLeod K
; Tudose I
; Osumi-Sutherland D
; Burdett T
; Baldock R
; Burger A
; Parkinson H
J Biomed Semantics
2016[Jun]; 7
(?): 35
PMID27267125
show ga
BACKGROUND: High throughput imaging is now available to many groups and it is
possible to generate a large quantity of high quality images quickly. Managing
this data, consistently annotating it, or making it available to the community
are all challenges that come with these methods. RESULTS: PhenoImageShare
provides an ontology-enabled lightweight image data query, annotation service and
a single point of access backed by a Solr server for programmatic access to an
integrated image collection enabling improved community access. PhenoImageShare
also provides an easy to use online image annotation tool with functionality to
draw regions of interest on images and to annotate them with terms from an
autosuggest-enabled ontology-lookup widget. The provenance of each image, and
annotation, is kept and links to original resources are provided. The semantic
and intuitive search interface is species and imaging technology neutral.
PhenoImageShare now provides access to annotation for over 100,000 images for 2
species. CONCLUSION: The PhenoImageShare platform provides underlying
infrastructure for both programmatic access and user-facing tools for biologists
enabling the query and annotation of federated images. PhenoImageShare is
accessible online at http://www.phenoimageshare.org .
free
free
free
