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10.1371/journal.pone.0178154 http://scihub22266oqcxt.onion/10.1371/journal.pone.0178154 C5443543!5443543 !28542514     free     free     free Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\28542514 .jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       PLoS+One 2017 ; 12 (5 ): e0178154 Nephropedia Template TP {{tp|p=28542514 |t=2017. PanWeb: A web interface for pan-genomic analysis |pdf=|usr=}}{{28542514 }} gab.com Text PanWeb: A web interface for pan-genomic analysis JO: PLoS One http://www.kidney.de/pget.php?&tw=1&pmid=28542514 #FOAvip With increased production of genomic data since the advent of next-generation sequencing (NGS), there has been a need to develop new bioinformatics tools and areas, such as comparative genomics. In comparative genomics, the genetic material of an organism is directly compared to that of another organism to better understand biological species. Moreover, the exponentially growing number of deposited prokaryote genomes has enabled the investigation of several genomic characteristics that are intrinsic to certain species. Thus, a new approach to comparative genomics, termed pan-genomics, was developed. In pan-genomics, various organisms of the same species or genus are compared. Currently, there are many tools that can perform pan-genomic analyses, such as PGAP (Pan-Genome Analysis Pipeline), Panseq (Pan-Genome Sequence Analysis Program) and PGAT (Prokaryotic Genome Analysis Tool). Among these software tools, PGAP was developed in the Perl scripting language and its reliance on UNIX platform terminals and its requirement for an extensive parameterized command line can become a problem for users without previous computational knowledge. Thus, the aim of this study was to develop a web application, known as PanWeb, that serves as a graphical interface for PGAP. In addition, using the output files of the PGAP pipeline, the application generates graphics using custom-developed scripts in the R programming language. PanWeb is freely available at http://www.computationalbiology.ufpa.br/panweb. Twit Text FOAVip PanWeb: A web interface for pan-genomic analysis ????PLoS One http://www.kidney.de/pget.php?&tw=1&pmid=28542514 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=28542514 #FOAvip English Wikipedia <ref>{{Cite pmid|28542514 }}</ref> PanWeb: A web interface for pan-genomic analysis #MMPMID28542514 Pantoja Y ; Pinheiro K ; Veras A ; Araújo F ; Lopes de Sousa A ; Guimarães LC ; Silva A ; Ramos RTJ PLoS One 2017[]; 12 (5 ): e0178154 PMID28542514 show ga With increased production of genomic data since the advent of next-generation sequencing (NGS), there has been a need to develop new bioinformatics tools and areas, such as comparative genomics. In comparative genomics, the genetic material of an organism is directly compared to that of another organism to better understand biological species. Moreover, the exponentially growing number of deposited prokaryote genomes has enabled the investigation of several genomic characteristics that are intrinsic to certain species. Thus, a new approach to comparative genomics, termed pan-genomics, was developed. In pan-genomics, various organisms of the same species or genus are compared. Currently, there are many tools that can perform pan-genomic analyses, such as PGAP (Pan-Genome Analysis Pipeline), Panseq (Pan-Genome Sequence Analysis Program) and PGAT (Prokaryotic Genome Analysis Tool). Among these software tools, PGAP was developed in the Perl scripting language and its reliance on UNIX platform terminals and its requirement for an extensive parameterized command line can become a problem for users without previous computational knowledge. Thus, the aim of this study was to develop a web application, known as PanWeb, that serves as a graphical interface for PGAP. In addition, using the output files of the PGAP pipeline, the application generates graphics using custom-developed scripts in the R programming language. PanWeb is freely available at http://www.computationalbiology.ufpa.br/panweb. |*Genomics [MESH] |*Software [MESH] |*User-Computer Interface [MESH] |Algorithms [MESH] |Computational Biology [MESH] |Computer Graphics [MESH] |Databases, Genetic [MESH] |Escherichia coli/classification/genetics [MESH] |Genome, Bacterial [MESH] |High-Throughput Nucleotide Sequencing [MESH] |Internet [MESH] |Phylogeny [MESH]PanWeb: A web interface for pan-genomic analysis (epmc).pdf DeepDyve Pubget Overpricing