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10.1021/acsnano.7b02718

http://scihub22266oqcxt.onion/10.1021/acsnano.7b02718
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C5564329!5564329 !28693322
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suck abstract from ncbi


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pmid28693322
      ACS+Nano 2017 ; 11 (7 ): 7091-7100
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  • Nanopore Sensing of Protein Folding #MMPMID28693322
  • Si W ; Aksimentiev A
  • ACS Nano 2017[Jul]; 11 (7 ): 7091-7100 PMID28693322 show ga
  • Single-molecule studies of protein folding hold keys to unveiling protein folding pathways and elusive intermediate folding states-attractive pharmaceutical targets. Although conventional single-molecule approaches can detect folding intermediates, they presently lack throughput and require elaborate labeling. Here, we theoretically show that measurements of ionic current through a nanopore containing a protein can report on the protein's folding state. Our all-atom molecular dynamics (MD) simulations show that the unfolding of a protein lowers the nanopore ionic current, an effect that originates from the reduction of ion mobility in proximity to a protein. Using a theoretical model, we show that the average change in ionic current produced by a folding-unfolding transition is detectable despite the orientational and conformational heterogeneity of the folded and unfolded states. By analyzing millisecond-long all-atom MD simulations of multiple protein transitions, we show that a nanopore ionic current recording can detect folding-unfolding transitions in real time and report on the structure of folding intermediates.
  • |*Nanopores/ultrastructure [MESH]
  • |*Protein Folding [MESH]
  • |Databases, Protein [MESH]
  • |Ion Transport [MESH]
  • |Molecular Dynamics Simulation [MESH]
  • |Protein Conformation [MESH]
  • |Protein Unfolding [MESH]


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