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2015 ; 112
(49
): 15119-24
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Microbes are trophic analogs of animals
#MMPMID26598691
Steffan SA
; Chikaraishi Y
; Currie CR
; Horn H
; Gaines-Day HR
; Pauli JN
; Zalapa JE
; Ohkouchi N
Proc Natl Acad Sci U S A
2015[Dec]; 112
(49
): 15119-24
PMID26598691
show ga
In most ecosystems, microbes are the dominant consumers, commandeering much of
the heterotrophic biomass circulating through food webs. Characterizing
functional diversity within the microbiome, therefore, is critical to
understanding ecosystem functioning, particularly in an era of global
biodiversity loss. Using isotopic fingerprinting, we investigated the trophic
positions of a broad diversity of heterotrophic organisms. Specifically, we
examined the naturally occurring stable isotopes of nitrogen ((15)N:(14)N) within
amino acids extracted from proteobacteria, actinomycetes, ascomycetes, and
basidiomycetes, as well as from vertebrate and invertebrate macrofauna
(crustaceans, fish, insects, and mammals). Here, we report that patterns of
intertrophic (15)N-discrimination were remarkably similar among bacteria, fungi,
and animals, which permitted unambiguous measurement of consumer trophic
position, independent of phylogeny or ecosystem type. The observed similarities
among bacterial, fungal, and animal consumers suggest that within a trophic
hierarchy, microbiota are equivalent to, and can be interdigitated with,
macrobiota. To further test the universality of this finding, we examined
Neotropical fungus gardens, communities in which bacteria, fungi, and animals are
entwined in an ancient, quadripartite symbiosis. We reveal that this symbiosis is
a discrete four-level food chain, wherein bacteria function as the apex
carnivores, animals and fungi are meso-consumers, and the sole herbivores are
fungi. Together, our findings demonstrate that bacteria, fungi, and animals can
be integrated within a food chain, effectively uniting the macro- and microbiome
in food web ecology and facilitating greater inclusion of the microbiome in
studies of functional diversity.