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2012 ; 850
(ä): 483-94
Nephropedia Template TP
Methods Mol Biol
2012[]; 850
(ä): 483-94
PMID22307715
show ga
In this chapter, we introduce interaction networks by describing how they are
generated, where they are stored, and how they are shared. We focus on publicly
available interaction networks and describe a simple way of utilizing these
resources. As a case study, we used Cytoscape, an open source and easy-to-use
network visualization and analysis tool to first gather and visualize a small
network. We have analyzed this network's topological features and have looked at
functional enrichment of the network nodes by integrating the gene ontology
database. The methods described are applicable to larger networks that can be
collected from various resources.