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2017 ; 66
(1
): e66-e82
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English Wikipedia
Fundamentals and Recent Developments in Approximate Bayesian Computation
#MMPMID28175922
Lintusaari J
; Gutmann MU
; Dutta R
; Kaski S
; Corander J
Syst Biol
2017[Jan]; 66
(1
): e66-e82
PMID28175922
show ga
Bayesian inference plays an important role in phylogenetics, evolutionary
biology, and in many other branches of science. It provides a principled
framework for dealing with uncertainty and quantifying how it changes in the
light of new evidence. For many complex models and inference problems, however,
only approximate quantitative answers are obtainable. Approximate Bayesian
computation (ABC) refers to a family of algorithms for approximate inference that
makes a minimal set of assumptions by only requiring that sampling from a model
is possible. We explain here the fundamentals of ABC, review the classical
algorithms, and highlight recent developments. [ABC; approximate Bayesian
computation; Bayesian inference; likelihood-free inference; phylogenetics;
simulator-based models; stochastic simulation models; tree-based models.]