Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=30050984
&cmd=llinks): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests
in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 215
Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\30050984
.jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117 Sci+Adv
2018 ; 4
(7
): eaap7885
Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
Deep reinforcement learning for de novo drug design
#MMPMID30050984
Popova M
; Isayev O
; Tropsha A
Sci Adv
2018[Jul]; 4
(7
): eaap7885
PMID30050984
show ga
We have devised and implemented a novel computational strategy for de novo design
of molecules with desired properties termed ReLeaSE (Reinforcement Learning for
Structural Evolution). On the basis of deep and reinforcement learning (RL)
approaches, ReLeaSE integrates two deep neural networks-generative and
predictive-that are trained separately but are used jointly to generate novel
targeted chemical libraries. ReLeaSE uses simple representation of molecules by
their simplified molecular-input line-entry system (SMILES) strings only.
Generative models are trained with a stack-augmented memory network to produce
chemically feasible SMILES strings, and predictive models are derived to forecast
the desired properties of the de novo-generated compounds. In the first phase of
the method, generative and predictive models are trained separately with a
supervised learning algorithm. In the second phase, both models are trained
jointly with the RL approach to bias the generation of new chemical structures
toward those with the desired physical and/or biological properties. In the
proof-of-concept study, we have used the ReLeaSE method to design chemical
libraries with a bias toward structural complexity or toward compounds with
maximal, minimal, or specific range of physical properties, such as melting point
or hydrophobicity, or toward compounds with inhibitory activity against Janus
protein kinase 2. The approach proposed herein can find a general use for
generating targeted chemical libraries of novel compounds optimized for either a
single desired property or multiple properties.