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2016 ; 32
(21
): 3324-3326
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ChAsE: chromatin analysis and exploration tool
#MMPMID27378294
Younesy H
; Nielsen CB
; Lorincz MC
; Jones SJ
; Karimi MM
; Möller T
Bioinformatics
2016[Nov]; 32
(21
): 3324-3326
PMID27378294
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: We present ChAsE, a cross-platform desktop application developed for
interactive visualization, exploration and clustering of epigenomic data such as
ChIP-seq experiments. ChAsE is designed and developed in close collaboration with
several groups of biologists and bioinformaticians with a focus on usability and
interactivity. Data can be analyzed through k-means clustering, specifying
presence or absence of signal in epigenetic data and performing set operations
between clusters. Results can be explored in an interactive heat map and profile
plot interface and exported for downstream analysis or as high quality figures
suitable for publications. AVAILABILITY AND IMPLEMENTATION: Software, source code
(MIT License), data and video tutorials available at http://chase.cs.univie.ac.at
CONTACT: : mkarimi@brc.ubc.ca or torsten.moeller@univie.ac.atSupplementary
information: Supplementary data are available at Bioinformatics online.