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2015 ; 43
(Database issue
): D849-55
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CMPD: cancer mutant proteome database
#MMPMID25398898
Huang PJ
; Lee CC
; Tan BC
; Yeh YM
; Julie Chu L
; Chen TW
; Chang KP
; Lee CY
; Gan RC
; Liu H
; Tang P
Nucleic Acids Res
2015[Jan]; 43
(Database issue
): D849-55
PMID25398898
show ga
Whole-exome sequencing, which centres on the protein coding regions of
disease/cancer associated genes, represents the most cost-effective method
to-date for deciphering the association between genetic alterations and diseases.
Large-scale whole exome/genome sequencing projects have been launched by various
institutions, such as NCI, Broad Institute and TCGA, to provide a comprehensive
catalogue of coding variants in diverse tissue samples and cell lines. Further
functional and clinical interrogation of these sequence variations must rely on
extensive cross-platforms integration of sequencing information and a proteome
database that explicitly and comprehensively archives the corresponding mutated
peptide sequences. While such data resource is a critical for the mass
spectrometry-based proteomic analysis of exomic variants, no database is
currently available for the collection of mutant protein sequences that
correspond to recent large-scale genomic data. To address this issue and serve as
bridge to integrate genomic and proteomics datasets, CMPD
(http://cgbc.cgu.edu.tw/cmpd) collected over 2 millions genetic alterations,
which not only facilitates the confirmation and examination of potential cancer
biomarkers but also provides an invaluable resource for translational medicine
research and opportunities to identify mutated proteins encoded by mutated genes.