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10.1093/bib/bbw020

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suck abstract from ncbi


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pmid27013646
      Brief+Bioinform 2017 ; 18 (3 ): 530-536
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  • A review of bioinformatic pipeline frameworks #MMPMID27013646
  • Leipzig J
  • Brief Bioinform 2017[May]; 18 (3 ): 530-536 PMID27013646 show ga
  • High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process sequence and metadata. Modern implementations of these frameworks differ on three key dimensions: using an implicit or explicit syntax, using a configuration, convention or class-based design paradigm and offering a command line or workbench interface. Here I survey and compare the design philosophies of several current pipeline frameworks. I provide practical recommendations based on analysis requirements and the user base.
  • |*Computational Biology [MESH]
  • |Humans [MESH]


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