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l�ll Natural antisense transcripts: sound or silence?Werner A; Berdal APhysiol Genomics 2005[Oct]; 23 (2): 125-31Antisense RNA was a rather uncommon term in a physiology environment until short interfering RNAs emerged as the tool of choice to knock down the expression of specific genes. As a consequence, the concept of RNA having regulatory potential became widely accepted. Yet, there is more to come. Computational studies suggest that between 15 and 25% of mammalian genes overlap, giving rise to pairs of sense and antisense RNAs. The resulting transcripts potentially interfere with each other's processing, thus representing examples of RNA-mediated gene regulation by endogenous, naturally occurring antisense transcripts. Concerns that the large-scale antisense transcription may represent transcriptional noise rather than a gene regulatory mechanism are strongly opposed by recent reports. A relatively small, well-defined group of antisense or noncoding transcripts is linked to monoallelic gene expression as observed in genomic imprinting, X chromosome inactivation, and clonal expression of B and T leukocytes. For the remaining, much larger group of bidirectionally transcribed genes, however, the physiological consequences of antisense transcription as well as the cellular mechanism(s) involved remain largely speculative.|Alleles[MESH]|Eukaryotic Cells/*metabolism[MESH]|Gene Expression Regulation/genetics[MESH]|Genome/genetics[MESH]|Humans[MESH]|RNA, Antisense/*genetics/*metabolism[MESH]|Transcription, Genetic/genetics[MESH] |