| Nr. | Year OPEN | Title | users say | rate good | rate bad | no link | Citation |
|---|
Systems biologyBioinformaticsMetabolomicsPlastidProtistsHemopoiesis (BASKET)ProteomicsSemantic WebText miningGenetics (Methods)Graph theoretical concepts| 1 | 2008 | Can systems biology understand pathway activation? Gene expression signatures as surrogate markers for understanding the complexity of pathway activation. | 
| + | - | nl | Curr Genomics 9(5):349-60 (2008) |
| 2 | 2007 | Resources, standards and tools for systems biology. |
| + | - | nl | Brief Funct Genomic Proteomic 6(3):240-51 (2007) |
| 3 | 2007 | Computational systems biology in cancer: modeling methods and applications. |
| + | - | nl | Gene Regul Syst Bio 1(-):91-110 (2007) |
| 4 | 2008 | Systems biology-What's in a name? |
| + | - | nl | Am J Physiol Cell Physiol 294(6):C1299 (2008) |
| 5 | 2004 | Primer on medical genomics. Part XIV: Introduction to systems biology--a new approach to understanding disease and treatment. |
| + | - | nl | Mayo Clin Proc 79(5):651-8 (2004) |
| 6 | 2011 | Systems biology in immunology: a computational modeling perspective. | 
| + | - | nl | Annu Rev Immunol 29(-):527-85 (2011) |
| 7 | 2011 | Systems biology applied to vaccine and immunotherapy development. |
| + | - | nl | BMC Syst Biol 5(-):146 (2011) |
| 8 | 2011 | Computational systems biology: integration of sequence, structure, network, and dynamics. |
| + | - | nl | BMC Syst Biol 5 Suppl 1(-):S1 (2011) |
| 9 | 2010 | Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators. |
| + | - | nl | J Biomed Biotechnol 2010(-):753904 (2010) |
| 10 | 2010 | Rewiring and regulation of cross-compartmentalized metabolism in protists. |
| + | - | nl | Philos Trans R Soc Lond B Biol Sci 365(1541):831-45 (2010) Ginger ML |
| 11 | 2010 | Biophysics and systems biology. |
| + | - | nl | Philos Transact A Math Phys Eng Sci 368(1914):1125-39 (2010) |
| 12 | 2010 | Hematopoiesis and its disorders: a systems biology approach. |
| + | - | nl | Blood 115(12):2339-47 (2010) |
| 13 | 2008 | Mathematical models in mammalian cell biology. |
| + | - | nl | Genome Biol 9(7):316 (2008) |
| 14 | 2010 | Towards a rigorous assessment of systems biology models: the DREAM3 challenges. |
| + | - | nl | PLoS One 5(2):e9202 (2010) |
| 15 | 2009 | Dynamic proteomics in modeling of the living cell. Protein-protein interactions. |
| + | - | nl | Biochemistry (Mosc) 74(13):1586-607 (2009) |
| 16 | 2005 | Multiscale modeling of cardiac cellular energetics. |
| + | - | nl | Ann N Y Acad Sci 1047(-):395-424 (2005) |
| 17 | 2010 | What is systems biology? | 
| + | - | nl | Future Microbiol 5(2):139-41 (2010) |
| 18 | 2006 | Graph-based methods for analysing networks in cell biology. |
| + | - | nl | Brief Bioinform 7(3):243-55 (2006) |
| 19 | 2006 | Representing, storing and accessing molecular interaction data: a review of models and tools. |
| + | - | nl | Brief Bioinform 7(4):331-8 (2006) |
| 20 | 2006 | Understanding the computational methodologies of systems biology. |
| + | - | nl | Brief Bioinform 7(4):315-7 (2006) |
| 21 | 2006 | Application of wavelet-based tools to study the dynamics of biological processes. |
| + | - | nl | Brief Bioinform 7(4):375-89 (2006) |
| 22 | 2006 | Computational methodologies for modelling, analysis and simulation of signalling networks. |
| + | - | nl | Brief Bioinform 7(4):339-53 (2006) |
| 23 | 2006 | Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. |
| + | - | nl | Brief Bioinform 7(4):364-74 (2006) |
| 24 | 2006 | Resources for integrative systems biology: from data through databases to networks and dynamic system models. |
| + | - | nl | Brief Bioinform 7(4):318-30 (2006) |
| 25 | 2006 | Mining literature for systems biology. |
| + | - | nl | Brief Bioinform 7(4):399-406 (2006) |
| 26 | 2006 | Strategies for dealing with incomplete information in the modeling of molecular interaction networks. |
| + | - | nl | Brief Bioinform 7(4):354-63 (2006) |
| 27 | 2006 | Advanced computing for systems biology. |
| + | - | nl | Brief Bioinform 7(4):390-8 (2006) |
| 28 | 2010 | SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs. |
| + | - | nl | Brief Bioinform 11(4):394-402 (2010) |
| 29 | 2007 | Protein interactions and disease: computational approaches to uncover the etiology of diseases. |
| + | - | nl | Brief Bioinform 8(5):333-46 (2007) |
| 30 | 2007 | Current progress in network research: toward reference networks for key model organisms. |
| + | - | nl | Brief Bioinform 8(5):318-32 (2007) |
| 31 | 2007 | Partial least squares: a versatile tool for the analysis of high-dimensional genomic data. |
| + | - | nl | Brief Bioinform 8(1):32-44 (2007) |
| 32 | 2008 | Building a knowledge base for systems pathology. |
| + | - | nl | Brief Bioinform 9(6):518-31 (2008) |
| 33 | 2007 | Graphs in molecular biology. |
| + | - | nl | BMC Bioinformatics 8 Suppl 6(-):S8 (2007) |
