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Jumonji C JmjC protein domain

Sir3p

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Scaffold Matrix attached regions

Sequencing (Nucleic acids)

Nr.	Year OPEN	Title	rate good	rate bad	no link	Citation
1	2001	The nuclear matrix and chromosomal DNA loops: is their any correlation between partitioning of the genome into loops and functional domains?	+	-	nl	Cell Mol Biol Lett 6(1):59-69 (2001)
2	1997	Chromatin assembly factors: a dual function in nucleosome formation and mobilization?	+	-	nl	Genes Cells 2(10):593-600 (1997)
3	2005	The relationship between chromatin structure and transcriptional activity in mammalian genomes.	+	-	nl	Brief Funct Genomic Proteomic 4(2):129-42 (2005)
4	2004	Chromatin higher order structure: opening up chromatin for transcription.	+	-	nl	Brief Funct Genomic Proteomic 2(4):334-43 (2004)
5	1999	Chromatin remodeling and transcriptional regulation.	+	-	nl	J Natl Cancer Inst 91(15):1288-94 (1999)
6	2001	Chromatin remodelling and DNA replication: from nucleosomes to loop domains.	+	-	nl	Oncogene 20(24):3086-93 (2001)
7	2001	ATP-dependent chromatin remodeling factors: nucleosome shufflers with many missions.	+	-	nl	Oncogene 20(24):3076-85 (2001)
8	2001	When the SWI/SNF complex remodels...the cell cycle.	+	-	nl	Oncogene 20(24):3067-75 (2001)
9	2001	Chromatin silencing and activation by Polycomb and trithorax group proteins.	+	-	nl	Oncogene 20(24):3055-66 (2001)
10	2001	Nuclear receptors coordinate the activities of chromatin remodeling complexes and coactivators to facilitate initiation of transcription.	+	-	nl	Oncogene 20(24):3047-54 (2001)
11	2001	Glucocorticoid receptor-mediated chromatin remodeling in vivo.	+	-	nl	Oncogene 20(24):3039-46 (2001)
12	2001	In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action.	+	-	nl	Oncogene 20(24):3028-38 (2001)
13	2001	Histone H3 phosphorylation and cell division.	+	-	nl	Oncogene 20(24):3021-7 (2001)
14	2001	Role of protein methylation in chromatin remodeling and transcriptional regulation.	+	-	nl	Oncogene 20(24):3014-20 (2001)
15	2001	Chromatin remodeling and transcriptional activation: the cast (in order of appearance).	+	-	nl	Oncogene 20(24):2991-3006 (2001)
16	2001	Chromatin remodeling: why it is important in cancer.	+	-	nl	Oncogene 20(24):2988-90 (2001)
17	1992	New insights into chromatin function in transcriptional control.	+	-	nl	FASEB J 6(15):3354-61 (1992)
18	2001	Chromatin assembly and organization.	+	-	nl	J Cell Sci 114(Pt 15):2711-2 (2001)
19	1992	Structure and dynamics of transcriptionally active chromatin.	+	-	nl	J Cell Sci 102 ( Pt 1)(-):1-5 (1992)
20	1989	Three-dimensional arrangements of chromatin and chromosomes: old concepts and new techniques.	+	-	nl	J Cell Sci 92 ( Pt 3)(-):325-8 (1989)
21	2009	The secret message of heterochromatin: new insights into the mechanisms and function of centromeric and pericentric repeat sequence transcription.	+	-	nl	Int J Dev Biol 53(2-3):259-68 (2009)
22	2009	Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development.	+	-	nl	Int J Dev Biol 53(2-3):203-14 (2009)
23	2008	Chromatin insulators and cohesins.	+	-	nl	EMBO Rep 9(4):327-9 (2008)
24	2004	Chromatin dynamics at DNA replication, transcription and repair.	+	-	nl	Eur J Biochem 271(12):2335-49 (2004)
25	2002	Chromatin assembly. Cooperation between histone chaperones and ATP-dependent nucleosome remodeling machines.	+	-	nl	Eur J Biochem 269(9):2268-74 (2002)
26	1998	Chromatin and transcription--how transcription factors battle with a repressive chromatin environment.	+	-	nl	Eur J Biochem 251(1-2):9-18 (1998)
27	2007	Dynamics and interplay of nuclear architecture, genome organization, and gene expression.	+	-	nl	Genes Dev 21(23):3027-43 (2007)
28	2007	Open conformation chromatin and pluripotency.	+	-	nl	Genes Dev 21(21):2671-6 (2007)
29	2005	RNA meets chromatin.	+	-	nl	Genes Dev 19(14):1635-55 (2005)
30	2003	Heterochromatin: stable and unstable invasions at home and abroad.	+	-	nl	Genes Dev 17(15):1805-12 (2003) Fahrner JA
31	2002	Wild chromatin: regulation of eukaryotic genes in their natural chromatin context.	+	-	nl	Genes Dev 16(16):2039-44 (2002)
32	2000	Exploring the transcription-chromatin interface.	+	-	nl	Genes Dev 14(16):1992-6 (2000)
33	1999	ATP-dependent remodeling and acetylation as regulators of chromatin fluidity.	+	-	nl	Genes Dev 13(18):2339-52 (1999)
34	2008	Chromatin organization and expression.	+	-	nl	Genome Biol 9(4):305 (2008)
35	2008	Replication forks, chromatin loops and dormant replication origins.	+	-	nl	Genome Biol 9(12):244 (2008)
36	2006	Chromatin remodeling and genome stability.	+	-	nl	Genome Biol 7(6):319 (2006)
37	2005	Chromatin dynamics rule the genome.	+	-	nl	Genome Biol 6(11):355 (2005)
38	2005	Close encounters between active genes in the nucleus.	+	-	nl	Genome Biol 6(11):237 (2005)
39	2003	Decoding the epigenetic effects of chromatin.	+	-	nl	Genome Biol 4(10):342 (2003)
40	2003	From linear genome sequence to three-dimensional organization of the cell nucleus.	+	-	nl	Genome Biol 4(3):310 (2003)
41	2005	Hyperacetylated chromatin domains: lessons from heterochromatin.	+	-	nl	J Biol Chem 280(23):21689-92 (2005)
42	1997	Chromatin remodeling and the control of gene expression.	+	-	nl	J Biol Chem 272(45):28171-4 (1997)
43	1995	Chromatin higher order structure: chasing a mirage?	+	-	nl	J Biol Chem 270(15):8373-6 (1995)
44	2008	Chromatin insulators: regulatory mechanisms and epigenetic inheritance.	+	-	nl	Mol Cell 32(1):1-9 (2008)
45	1999	Chromatin disruption and modification.	+	-	nl	Nucleic Acids Res 27(3):711-20 (1999)
46	1997	Transcription factor access to chromatin.	+	-	nl	Nucleic Acids Res 25(18):3559-63 (1997)
47	1976	DNA replication in eukaryotes: a model for the specific involvement of chromatin subunits.	+	-	nl	Nucleic Acids Res 3(1):69-78 (1976)
48	1975	A model for chromatin structure.	+	-	nl	Nucleic Acids Res 2(8):1275-89 (1975)
49	2002	The insulation of genes from external enhancers and silencing chromatin.	+	-	nl	Proc Natl Acad Sci U S A 99 Suppl 4(-):16433-7 (2002)
50	1996	Chromatin structure and gene expression.	+	-	nl	Proc Natl Acad Sci U S A 93(18):9384-8 (1996)
51	2008	Chromatin dynamics and gene positioning.	+	-	nl	Cell 132(6):929-34 (2008)
52	2007	Chromatin modifications and their function.	+	-	nl	Cell 128(4):693-705 (2007)
53	2007	Higher-order structures of chromatin: the elusive 30 nm fiber.	+	-	nl	Cell 128(4):651-4 (2007)
54	2004	Making the right choice--long-range chromosomal interactions in development.	+	-	nl	Cell 119(5):583-6 (2004)
55	2002	Signaling network model of chromatin.	+	-	nl	Cell 111(6):771-8 (2002)
56	2002	Setting the boundaries of chromatin domains and nuclear organization.	+	-	nl	Cell 111(2):151-4 (2002)
57	2002	Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects.	+	-	nl	Cell 108(4):489-500 (2002)
58	2002	Cooperation between complexes that regulate chromatin structure and transcription.	+	-	nl	Cell 108(4):475-87 (2002)
59	2001	The many faces of chromatin remodeling: SWItching beyond transcription.	+	-	nl	Cell 106(5):523-5 (2001)
60	2000	Looping, linking, and chromatin activity: new insights into beta-globin locus regulation.	+	-	nl	Cell 100(5):499-502 (2000)
61	1999	Methylation-induced repression--belts, braces, and chromatin.	+	-	nl	Cell 99(5):451-4 (1999)
62	1999	The "dark side" of chromatin remodeling: repressive effects on transcription.	+	-	nl	Cell 99(5):443-6 (1999)
63	1997	Compartmentalization of eukaryotic gene expression: causes and effects.	+	-	nl	Cell 91(3):291-4 (1997)
64	1997	Architectural transcription factors: proteins that remodel DNA.	+	-	nl	Cell 88(6):733-6 (1997)
65	2005	Condensins: organizing and segregating the genome.	+	-	nl	Curr Biol 15(7):R265-75 (2005)
66	1998	Chromatin structure: linking structure to function with histone H1.	+	-	nl	Curr Biol 8(22):R788-91 (1998)
67	1998	Chromatin boundaries: punctuating the genome.	+	-	nl	Curr Biol 8(15):R521-4 (1998)
68	2008	Chromatin remodelling and actin organisation.	+	-	nl	FEBS Lett 582(14):2041-50 (2008)
69	2004	Keeping fingers crossed: heterochromatin spreading through interdigitation of nucleosome arrays.	+	-	nl	FEBS Lett 564(1-2):4-8 (2004)
70	2000	ATP-dependent chromatin remodeling: going mobile.	+	-	nl	FEBS Lett 476(1-2):68-72 (2000)
71	1995	Transcription factor-mediated chromatin remodelling: mechanisms and models.	+	-	nl	FEBS Lett 369(1):118-21 (1995)
72	1976	Chromatin structure and specificity revealed by immunological techniques.	+	-	nl	FEBS Lett 70(1):1-10 (1976)
73	2007	Facultative heterochromatin: is there a distinctive molecular signature?	+	-	nl	Mol Cell 28(1):1-13 (2007)
74	2005	The dynamics of chromatin remodeling at promoters.	+	-	nl	Mol Cell 19(2):147-57 (2005)
75	2005	The dynamics of histone H1 function in chromatin.	+	-	nl	Mol Cell 17(5):617-20 (2005)
76	2002	Chromatin structure and dynamics: state-of-the-art.	+	-	nl	Mol Cell 10(1):13-9 (2002)
77	2002	Opening chromatin.	+	-	nl	Mol Cell 9(2):209-11 (2002)
78	2006	Nuclear receptor mediated gene regulation through chromatin remodeling and histone modifications.	+	-	nl	Endocr J 53(2):157-72 (2006)
79	2009	The role of UBF in regulating the structure and dynamics of transcriptionally active rDNA chromatin.	+	-	nl	Epigenetics 4(6):374-82 (2009)
80	2006	DMMC workshop: unravelling chromatin and the role of epigenetics in disease.	+	-	nl	Epigenetics 1(4):187-9 (2006)
81	2002	Chromatin structure and control of beta-like globin gene switching.	+	-	nl	Exp Biol Med (Maywood) 227(9):683-700 (2002)
82	2003	Perturbations of chromatin structure in human genetic disease: recent advances.	+	-	nl	Hum Mol Genet 12 Spec No 2(-):R207-13 (2003)
83	2001	Human diseases with underlying defects in chromatin structure and modification.	+	-	nl	Hum Mol Genet 10(20):2233-42 (2001)
84	2001	Lessons from the human genome: transitions between euchromatin and heterochromatin.	+	-	nl	Hum Mol Genet 10(20):2215-23 (2001)
85	2000	Chromatin modification and disease.	+	-	nl	J Med Genet 37(12):905-15 (2000)
86	1999	Nuclear receptors: coactivators, corepressors and chromatin remodeling in the control of transcription.	+	-	nl	J Mol Endocrinol 23(3):255-75 (1999)
87	2004	The role of chromatin in molecular mechanisms of toxicity.	+	-	nl	Toxicol Sci 80(2):218-24 (2004)
88	2009	Chromatin modifications: the driving force of senescence and aging?	+	-	nl	Aging (Albany NY) 1(2):182-90 (2009)
89	2002	Heterochromatin in animals and plants. Similarities and differences.	+	-	nl	Plant Physiol 129(1):40-9 (2002)
90	2010	Chromatin higher-order structure and dynamics.	+	-	nl	Cold Spring Harb Perspect Biol 2(5):a000596 (2010)
91	2010	The yin and yang of chromatin spatial organization.	+	-	nl	Genome Biol 11(3):204 (2010)
92	2007	Moving chromatin within the interphase nucleus-controlled transitions?	+	-	nl	Semin Cell Dev Biol 18(5):698-706 (2007)
93	2007	The role of insulator elements in large-scale chromatin structure in interphase.	+	-	nl	Semin Cell Dev Biol 18(5):682-90 (2007)
94	2007	A variable topology for the 30-nm chromatin fibre.	+	-	nl	EMBO Rep 8(12):1129-34 (2007)
95	2010	A proposal for kinetic proof reading by ISWI family chromatin remodeling motors.	+	-	nl	Curr Opin Chem Biol 14(5):660-5 (2010)
96	2007	Mobility and immobility of chromatin in transcription and genome stability.	+	-	nl	Curr Opin Genet Dev 17(5):435-42 (2007)
97	2008	Chromatin state maps: new technologies, new insights.	+	-	nl	Curr Opin Genet Dev 18(2):109-15 (2008)
98	2010	Heterochromatin dysregulation in human diseases.	+	-	nl	J Appl Physiol 109(1):232-42 (2010)
99	2010	Confining euchromatin/heterochromatin territory: jumonji crosses the line.	+	-	nl	Genes Dev 24(14):1465-78 (2010)
100	2010	Silent information regulator 3: the Goldilocks of the silencing complex.	+	-	nl	Genes Dev 24(2):115-22 (2010)
101	2009	Calorie restriction and the exercise of chromatin.	+	-	nl	Genes Dev 23(16):1849-69 (2009)
102	2002	Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs).	+	-	nl	Nucleic Acids Res 30(15):3433-42 (2002)
103	2011	Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains.	+	-	nl	Nucleic Acids Res 39(17):7428-43 (2011)

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All data shown were primarily retrieved from MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.