Ontology

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Ontology

LE WE PMID CA

Ontology

8188

Ontologie

Bayesian statistics

Cell biology (BASKET)

Classification images

Data base (Medicine Biology Pharmacology)

Data mining

Drug development

Genome (Annotation)

Guideline

Laboratory animal (Mouse)

Literature searching

Microarray (Gene expression analysis)

Ontology

Orthologous genes

Semantic Web

Support vector machine

Systematic review

Systems biology

Text mining

Thyroid (Neoplasia)

Vision (Neurophysiology)

2011 1	Advancing science through mining libraries, ontologies, and communities. [21566119] J Biol Chem 286(27): 23659-66 (2011)
2005 2	Anatomical ontologies: names and places in biology. [15833128] Genome Biol 6(4): 108 (2005)
2010 3	Computational ontologies in orthopaedic surgery. [20496021] Clin Orthop Relat Res 468(10): 2612-20 (2010)
2006 4	Bio-ontologies: current trends and future directions. [16899495] Brief Bioinform 7(3): 256-74 (2006)
2011 5	The what, where, how and why of gene ontology--a primer for bioinformaticians. [21330331] Brief Bioinform 12(6): 723-35 (2011)
2011 6	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. [21873635] Brief Bioinform 12(5): 449-62 (2011)
2008 7	Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? [19060303] Brief Bioinform 9(6): 466-78 (2008)
2005 8	Text mining and ontologies in biomedicine: making sense of raw text. [16212772] Brief Bioinform 6(3): 239-51 (2005)
2008 9	Biomedical ontologies: a functional perspective. [18077472] Brief Bioinform 9(1): 75-90 (2008)
2006 10	PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. [17176458] BMC Bioinformatics 7(-): 535 (2006)
2011 11	How the gene ontology evolves. [21819553] BMC Bioinformatics 12(-): 325 (2011)
2010 12	Classifying and scoring of molecules with the NGN: new datasets, significance tests, and generalization. [21034429] BMC Bioinformatics 11 Suppl 8(-): S4 (2010)
2007 13	Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. [17629909] BMC Bioinformatics 8(-): 252 (2007)
2007 14	Novel definition files for human GeneChips based on GeneAnnot. [18005434] BMC Bioinformatics 8(-): 446 (2007)
2007 15	Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markers. [17411443] BMC Bioinformatics 8(-): 118 (2007)
2006 16	The MGED Ontology: a resource for semantics-based description of microarray experiments. [16428806] Bioinformatics 22(7): 866-73 (2006)
2005 17	Concept-based annotation of enzyme classes. [15661799] Bioinformatics 21(9): 2059-66 (2005)
2009 18	Application and evaluation of automated semantic annotation of gene expression experiments. [19376825] Bioinformatics 25(12): 1543-9 (2009)
2010 19	Phenotype ontologies for mouse and man: bridging the semantic gap. [20427557] Dis Model Mech 3(5-6): 281-9 (2010)
2010 20	Ontology and the future of dental research informatics. [20884915] J Am Dent Assoc 141(10): 1173-5 (2010)
2011 21	Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. [21411447] Database (Oxford) 2011(-): bar004 (2011)
2008 22	The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. [18975148] Neuroinformatics 6(3): 175-94 (2008)
2006 23	Fast, cheap and out of control: a zero curation model for ontology development. [17094234] Pac Symp Biocomput -(-): 128-39 (2006)
2004 24	A tool for abstracting relevant classes of concepts: the Common Ancestry Summarizer. [15360853] Stud Health Technol Inform 107(Pt 1): 449-53 (2004)
2009 25	A Controlled Vocabulary to Represent Sonographic Features of the Thyroid and its application in a Bayesian Network to Predict Thyroid Nodule Malignancy. [21347173] Summit on Translat Bioinforma 2009(-): 68-72 (2009)
2010 26	A reference guide for tree analysis and visualization. [20175922] BioData Min 3(1): 1 (2010)
2011 27	Semantic validation of the use of SNOMED CT in HL7 clinical documents. [21762489] J Biomed Semantics 2(1): 2 (2011)
2011 28	Classification images: A review. [21536726] J Vis 11(5): - (2011)
2007 29	Cytoview: development of a cell modelling framework. [17914238] J Biosci 32(5): 965-77 (2007)
2008 30	Standards and ontologies in computational systems biology. [18793134] Essays Biochem 45(-): 211-22 (2008)
2007 31	Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species. [17566825] Mamm Genome 18(6-7): 402-11 (2007)
2011 32	PubChem3D: Biologically relevant 3-D similarity. [21781288] J Cheminform 3(1): 26 (2011)
2002 33	Ontologies for molecular biology and bioinformatics. [12542404] In Silico Biol 2(3): 179-93 (2002)
2004 34	Notes on the use of ontologies in the biochemical domain. [15089756] In Silico Biol 4(1): 89-96 (2004)
2008 35	A genecentric Human Protein Atlas for expression profiles based on antibodies. [18669619] Mol Cell Proteomics 7(10): 2019-27 (2008)
2006 36	Mapping SNOMED-CT concepts to MeSH concepts. [17238584] AMIA Annu Symp Proc -(-): 965 (2006)
2010 37	The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies. [21347039] AMIA Annu Symp Proc 2010(-): 552-6 (2010)
2010 38	A Prospective Evaluation of an Automated Classification System to Support Evidence-based Medicine and Systematic Review. [21346953] AMIA Annu Symp Proc 2010(-): 121-5 (2010)
2005 39	Semantic clinical guideline documents. [16779037] AMIA Annu Symp Proc -(-): 236-40 (2005)
2003 40	Ambiguity of human gene symbols in LocusLink and MEDLINE: creating an inventory and a disambiguation test collection. [14728264] AMIA Annu Symp Proc -(-): 704-8 (2003)
2008 41	Using an integrated ontology and information model for querying and reasoning about phenotypes: The case of autism. [18999231] AMIA Annu Symp Proc -(-): 727-31 (2008)
2008 42	SYRIAC: The systematic review information automated collection system a data warehouse for facilitating automated biomedical text classification. [18999194] AMIA Annu Symp Proc -(-): 825-9 (2008)
2004 43	Molecular similarity: a key technique in molecular informatics. [15534697] Org Biomol Chem 2(22): 3204-18 (2004)
2010 44	Using comparative genome analysis to identify problems in annotated microbial genomes. [20430813] Microbiology 156(Pt 7): 1909-17 (2010)
2008 45	What are decision trees? [18779814] Nat Biotechnol 26(9): 1011-3 (2008)
2010 46	Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology. [19921742] Mol Reprod Dev 77(4): 314-29 (2010)
2010 47	Structured digital tables on the Semantic Web: toward a structured digital literature. [20739925] Mol Syst Biol 6(-): 403 (2010)

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